TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQX01000139.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    32   0.17 
gb|AAQX01000489.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    31   0.37 
gb|AAQX01000560.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   5.4  
gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   9.1  
gb|AAQX01000143.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   9.1  

>gb|AAQX01000139.1| Phytophthora ramorum strain Pr102 Pramorum_Cont139, whole genome
             shotgun sequence
          Length = 58346

 Score = 32.3 bits (72), Expect = 0.17
 Identities = 28/68 (41%), Positives = 38/68 (55%)
 Frame = +3

Query: 192   HRGMVVGAGFMMNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQIISG 251
             H   VV A  ++ ++AS+L QSG+  V L G    S L  GAV     L+ HI  Q I+G
Sbjct: 53310 HSTQVVDA--VVALIASALEQSGSGVVALGGVAGSSTLADGAV---TILSGHIAIQ-IAG 53471

Query: 252   TAAGTRTA 259
              A+G+R A
Sbjct: 53472 AASGSRAA 53495


>gb|AAQX01000489.1| Phytophthora ramorum strain Pr102 Pramorum_Cont489, whole genome
             shotgun sequence
          Length = 83904

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 31/149 (20%), Positives = 64/149 (42%)
 Frame = -2

Query: 49    KEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGU 108
             K+ +L++M  +  EA   L  K+E     L++     A+ + +  DT+  + ++   +  
Sbjct: 74783 KKENLERMNQKLAEANAVLSQKQE----ELRVVNENVAMLEKQCKDTLDEKDKLANDAAV 74616

Query: 109   GYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNILSTGFLASI 168
               +R     AE L+  L  E    ++             SV +  E +  ++   FLA+ 
Sbjct: 74615 TEKRLVR--AEKLISGLSVEGARWKE-------------SVASLAESVLALIGDTFLAAA 74481

Query: 169   AISFFAPFLRGALPPHIAEWIEQHRGMVV 197
              IS++ PF  G     + +W+ Q + + +
Sbjct: 74480 CISYYGPFTGGFRQRIVDQWVTQTQALAI 74394


>gb|AAQX01000560.1| Phytophthora ramorum strain Pr102 Pramorum_Cont560, whole genome
             shotgun sequence
          Length = 84783

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = -1

Query: 97    QHEVRVEYCS--GUGYRR---HYEEVAESLLRSLPPELREQQKGKKPFIKFV-GVVYSVG 150
             ++E R  +C   G G++R   H +  +  +  S   ELR   +   PFI FV G V S  
Sbjct: 72144 RYECRCSHCGEIGCGHQRVCAHVDNYSVEVQYSPQEELRPSAQALAPFICFVGGFVNSFH 71965

Query: 151   AFREFIGNILSTGFLASIAISFFA 174
             A R  + ++L      ++   F A
Sbjct: 71964 AKRSGVFSVLGNNNNVNVFYFFTA 71893


>gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Cont552, whole genome
             shotgun sequence
          Length = 199956

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 66    HLRSKRELILAVLKLEKREEALRKARVTDTVQH-------EVRVEYCSGUGYRRHYEEVA 118
             H+R+K++  L V +LE+R   L    +   VQH       ++ VE  S    + +++ + 
Sbjct: 22290 HIRAKQDTRLRVTELEERSRTLVLFLLAVNVQHRNIDVVQQLTVELDSTARRKENHDLLL 22469

Query: 119   ESLLRSLPPELREQQK 134
             + LL     E REQQ+
Sbjct: 22470 QVLL-----EEREQQQ 22502


>gb|AAQX01000143.1| Phytophthora ramorum strain Pr102 Pramorum_Cont143, whole genome shotgun
              sequence
          Length = 149902

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 159    ILSTGFLASIAISFFAPFLRGALPPHIAEW 188
              +LST FLA+       PFLR   PP I  W
Sbjct: 140965 VLSTAFLAT-------PFLRWRAPPSIGMW 141033


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:07 PM
  Number of letters in database: 14,903,514
  Number of sequences in database:  572
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,508,947
Number of Sequences: 572
Number of extensions: 46389
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 99
length of query: 259
length of database: 4,967,838
effective HSP length: 93
effective length of query: 166
effective length of database: 4,914,642
effective search space: 815830572
effective search space used: 815830572
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)