TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete (278 letters) Database: genome.fa 113 sequences; 29,453,142 total letters Searching........................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335 chromosome ... 30 1.4 gb|AAFD02000013.1| Thalassiosira pseudonana CCMP1335 chromosome ... 30 1.8 gb|AAFD02000019.1| Thalassiosira pseudonana CCMP1335 chromosome ... 30 2.3 gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome ... 29 3.0 gb|AAFD02000075.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_23... 29 4.0 gb|AAFD02000002.1| Thalassiosira pseudonana CCMP1335 chromosome ... 29 4.0 gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome ... 28 5.2 gb|AAFD02000038.1| Thalassiosira pseudonana CCMP1335 chromosome ... 28 8.9 gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome ... 28 8.9 >gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335 chromosome 3 THAPSchr_3_Cont5, whole genome shotgun sequence Length = 2440052 Score = 30.4 bits (67), Expect = 1.4 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 10/77 (12%) Frame = +3 Query: 181 WVTTDSPYIIPQH-------RSLEDRVSAA---RVLQQGAPGCALVLDTMANSSSSAYGA 230 W +PQH S D SA RVL++ A VL T+ SS + + Sbjct: 1548711 WTVAHISLTMPQHFF*YSEPTSGLDSFSAMQVIRVLKKIAHAGCSVLFTIHQPSSDVFNS 1548890 Query: 231 YFERLYVIQSGTIMYQG 247 F+RL ++ G +MYQG Sbjct: 1548891 -FDRLILLNKGMVMYQG 1548938 >gb|AAFD02000013.1| Thalassiosira pseudonana CCMP1335 chromosome 10 THAPSchr_10_Cont13, whole genome shotgun sequence Length = 1105668 Score = 30.0 bits (66), Expect = 1.8 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -3 Query: 46 LGRRRRGQPEPEVELNSEGEEVPP 69 LGRRRRG P P E S +PP Sbjct: 206536 LGRRRRGAPPPSSESESSPRRLPP 206465 >gb|AAFD02000019.1| Thalassiosira pseudonana CCMP1335 chromosome 12 THAPSchr_12_Cont19, whole genome shotgun sequence Length = 630688 Score = 29.6 bits (65), Expect = 2.3 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 234 RLYVIQSGTIMYQGGRGPDGYQVSELRTWLERYDEQLHGARPRR 277 ++ IQ GT+ + RGP Q++ R WL Y+E L A P R Sbjct: 231953 KIKTIQEGTVAQR--RGPGSLQINRRRRWL--YNEVLPSAPPPR 231834 >gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont4, whole genome shotgun sequence Length = 2234390 Score = 29.3 bits (64), Expect = 3.0 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -2 Query: 18 SCLVLFPRFLGTAFMLWLLDFLCIRKHFLG 47 SCL F T+ LW +DFLC R H LG Sbjct: 1262458 SCLYQFC----TSCSLWKIDFLCCRHHSLG 1262381 >gb|AAFD02000075.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_23x33_Cont32, whole genome shotgun sequence Length = 11950 Score = 28.9 bits (63), Expect = 4.0 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = -1 Query: 204 RVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQG 247 +VL++ A VL T+ SS + + F+RL ++ G +MYQG Sbjct: 3118 KVLKKIAQAGCSVLFTIHQPSSDVFNS-FDRLILLNRGMVMYQG 2990 >gb|AAFD02000002.1| Thalassiosira pseudonana CCMP1335 chromosome 1 THAPSchr_1_Cont2, whole genome shotgun sequence Length = 2672327 Score = 28.9 bits (63), Expect = 4.0 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +3 Query: 75 CVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSE--VVLPDGFQSQHILDYAQG- 131 C +D +++S+ V G+ L + + P S V + D F+ HILD + Sbjct: 1586709 CGGNDGECFSVSSVHKVLEGRNLYILGWSGDINALPGSNHIVGVNDVFEGWHILDLTEQE 1586888 Query: 132 -NRPLVLNFGSCTUPPFMARMS 152 N PLV G T PP + R++ Sbjct: 1586889 *NIPLVTENG--TNPPIVDRVN 1586948 >gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont6, whole genome shotgun sequence Length = 1267202 Score = 28.5 bits (62), Expect = 5.2 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +3 Query: 61 NSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFF 100 NSEG++ +C S D+R+C L L H L F Sbjct: 936495 NSEGDKANISSGKLCSSGDSRMCCLLHLAIDLHNPALSDF 936614 >gb|AAFD02000038.1| Thalassiosira pseudonana CCMP1335 chromosome 22 THAPSchr_22_Cont38, whole genome shotgun sequence Length = 637246 Score = 27.7 bits (60), Expect = 8.9 Identities = 20/68 (29%), Positives = 30/68 (44%) Frame = -1 Query: 40 CIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDF 99 C + + +R P + ++ +E +D C S NR CT K+VW KL Sbjct: 388330 CYPSCYCQKHQRSPPSSHNQPSTIHQECNSNDR*TCTSKPNRNCTYH--KSVW---KLSQ 388166 Query: 100 FKQAHEGG 107 + HEGG Sbjct: 388165 S*KDHEGG 388142 >gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont8, whole genome shotgun sequence Length = 1132590 Score = 27.7 bits (60), Expect = 8.9 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Frame = +1 Query: 167 FLIIY---IEEAHPSDGWVTTDSP----YIIPQHR-SLEDRVSAARVLQQGAPGCALVLD 218 FL+I+ EEAHP+ ++T+ P +I+ HR + ++ V +PG +++ Sbjct: 530554 FLLIF*CKREEAHPNQLFITSHDPANTHHIMMFHRVVIGIALTMGSVSSFSSPGHSILAR 530733 Query: 219 TMANSSSSAYGAYFERLYVIQS 240 M +S++S + E+ + S Sbjct: 530734 PMQSSTTSRFSTMIEKSEISDS 530799 Database: genome.fa Posted date: Jan 19, 2010 5:14 PM Number of letters in database: 29,453,142 Number of sequences in database: 113 Lambda K H 0.322 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,703,922 Number of Sequences: 113 Number of extensions: 212616 Number of successful extensions: 827 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 738 Number of HSP's gapped (non-prelim): 250 length of query: 278 length of database: 9,817,714 effective HSP length: 98 effective length of query: 180 effective length of database: 9,806,640 effective search space: 1765195200 effective search space used: 1765195200 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)