TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: genome.fa 
           32,746 sequences; 89,612,356 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAHK01008593.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   1.6  
gb|AAHK01000516.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   1.6  
gb|AAHK01000234.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   1.6  
gb|AAHK01001116.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    31   2.1  
gb|AAHK01000501.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   4.6  
gb|AAHK01000113.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   4.6  
gb|AAHK01001625.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   6.0  

>gb|AAHK01008593.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053402605, whole genome
            shotgun sequence
          Length = 1226

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 174  EAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMA 221
            E  P D W+ T   +  P + +   RV   R+ QQGAP    V  T+A
Sbjct: 1222 EMRPDDQWMNTGQLHHTPPNLNTTRRVREQRLQQQGAPANMPVYGTIA 1079


>gb|AAHK01000516.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506457, whole genome
             shotgun sequence
          Length = 31941

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 174   EAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMA 221
             E  P D W+ T   +  P + +   RV   R+ QQGAP    V  T+A
Sbjct: 27531 EMRPDDQWMNTGQLHHTPPNLNTTRRVREQRLQQQGAPANMPVYGTIA 27388


>gb|AAHK01000234.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509693, whole genome
             shotgun sequence
          Length = 48342

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 174   EAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMA 221
             E  P D W+ T   +  P + +   RV   R+ QQGAP    V  T+A
Sbjct: 40155 EMRPDDQWMNTGQLHHTPPNLNTTRRVREQRLQQQGAPANMPVYGTIA 40012


>gb|AAHK01001116.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053503633, whole genome
             shotgun sequence
          Length = 17157

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 84    TLASLKAVWHGQKLDFFKQAHEGGPAP 110
             T  S  A WHG+ L F    H+G PAP
Sbjct: 14241 TSVSAAANWHGRSLSFVTGRHDGRPAP 14161


>gb|AAHK01000501.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506835, whole genome
             shotgun sequence
          Length = 32562

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 54    PEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAV 91
             P+P  +   E   VPPD   +  +D +RLC + S++AV
Sbjct: 22700 PDPSDDNCREKNMVPPDVAALNGTDSSRLCNMHSMRAV 22813


>gb|AAHK01000113.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506945, whole genome
             shotgun sequence
          Length = 65311

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 54    PEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAV 91
             P+P  +   E   VPPD   +  +D +RLC + S++AV
Sbjct: 14960 PDPSDDNCREKNMVPPDVAALNGTDSSRLCNMHSMRAV 15073


>gb|AAHK01001625.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506979, whole genome
            shotgun sequence
          Length = 10737

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 16   TASCLVLFPRFLGTAFMLWLLDFLCIRKHF---LGRRRRGQPEPEVELNSEGEE 66
            +A  L +  R   TAF LW +++ CI +HF     RR+    +      ++GEE
Sbjct: 7602 SAPSLTIRTRLSATAFTLWRINW*CITRHFTHTTHRRKMSLFDATKARKNDGEE 7763


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:13 PM
  Number of letters in database: 89,612,356
  Number of sequences in database:  32,746
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,399,735
Number of Sequences: 32746
Number of extensions: 804876
Number of successful extensions: 3270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3270
length of query: 278
length of database: 29,870,785
effective HSP length: 105
effective length of query: 173
effective length of database: 26,432,455
effective search space: 4572814715
effective search space used: 4572814715
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)