TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: genome.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQX01000068.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    30   0.70 
gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    28   4.5  

>gb|AAQX01000068.1| Phytophthora ramorum strain Pr102 Pramorum_Cont68, whole genome shotgun
             sequence
          Length = 52266

 Score = 30.4 bits (67), Expect = 0.70
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 107   GPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVD 166
             GPAP+     PD F  +  +D      P+  N+ SC    F   M+     V  Y R +D
Sbjct: 16924 GPAPHCRAGSPDYFPPKTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLD 17103


>gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Cont552, whole genome
             shotgun sequence
          Length = 199956

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 192   QHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSA 227
             Q R      SA RVLQ+G P  AL L ++A S SSA
Sbjct: 72604 QRRQEPGSFSAGRVLQRGCPLAAL-LSSIAQSRSSA 72708


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:07 PM
  Number of letters in database: 14,903,514
  Number of sequences in database:  572
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,349,583
Number of Sequences: 572
Number of extensions: 121891
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 209
length of query: 278
length of database: 4,967,838
effective HSP length: 94
effective length of query: 184
effective length of database: 4,914,070
effective search space: 904188880
effective search space used: 904188880
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)