TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: genome.fa 
           306 sequences; 11,192,215 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AACB02000020.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    28   3.5  
gb|AACB02000015.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    28   3.5  
gb|AACB02000013.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    27   5.9  

>gb|AACB02000020.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_20, whole genome shotgun
              sequence
          Length = 187573

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 44     HFLGRRRRGQPEPEVELNSEGEEVPPDDPP 73
              H L +  RGQ  P   L+ EG   PP  PP
Sbjct: 106817 HLLRQAARGQSHPPGLLHPEGCHAPPRPPP 106728


>gb|AACB02000015.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_15, whole genome shotgun
             sequence
          Length = 231239

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 199   RVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQG 247
             R  A  ++  GAP  +L   + ++SS  A GA+  R   +++ TI+Y+G
Sbjct: 88750 RCQAQALVASGAPDSSLDSCSCSSSSWPAPGAHTFRKPFLETVTILYEG 88604


>gb|AACB02000013.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_13, whole genome shotgun
             sequence
          Length = 266103

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 254   YQVSELRTWLERYDEQLHGARP 275
             Y  S++R+W+ R+  Q+HG  P
Sbjct: 49143 YNRSDIRSWMRRHIVQVHGLTP 49208


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:05 PM
  Number of letters in database: 11,192,215
  Number of sequences in database:  306
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,489,427
Number of Sequences: 306
Number of extensions: 81384
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 162
length of query: 278
length of database: 3,730,738
effective HSP length: 92
effective length of query: 186
effective length of database: 3,702,586
effective search space: 688680996
effective search space used: 688680996
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)