TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: genome.fa 
           32,746 sequences; 89,612,356 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAHK01004251.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   1.1  
gb|AAHK01001327.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   1.1  
gb|AAHK01000093.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   3.3  
gb|AAHK01000658.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   4.3  
gb|AAHK01003005.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   4.3  
gb|AAHK01000034.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   4.3  
gb|AAHK01000709.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   5.6  
gb|AAHK01000056.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   5.6  
gb|AAHK01001848.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    29   7.3  
gb|AAHK01000135.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    29   7.3  
gb|AAHK01000060.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    29   7.3  
gb|AAHK01000501.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    29   9.5  

>gb|AAHK01004251.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053510585, whole genome
            shotgun sequence
          Length = 2048

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 109  GATCHLLDFASPERPLVVN----FGSATUPPFTSQLPAFRKLVEEFSSVAD 155
            GA C+++D  S E P V      F     PP T+  PA   L+EE+ S  D
Sbjct: 1859 GAGCNVVDCVSLEGPPVTAALCLFSFPVAPPLTTSFPAVCGLIEEWFSALD 2011


>gb|AAHK01001327.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053510555, whole genome
            shotgun sequence
          Length = 13989

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -1

Query: 109  GATCHLLDFASPERPLVVN----FGSATUPPFTSQLPAFRKLVEEFSSVAD 155
            GA C+++D  S E P V      F     PP T+  PA   L+EE+ S  D
Sbjct: 1227 GAGCNVVDCVSLEGPPVTAALCLFSFPVAPPLTTSFPAVCGLIEEWFSALD 1075


>gb|AAHK01000093.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053511367, whole genome
             shotgun sequence
          Length = 69638

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 194   AAQQLLERFSLPPQCRVVADRMDNNANIAYGVA 226
             AA  L+  F+LPP CR  A R  N+A +   VA
Sbjct: 56946 AADTLVTNFALPPSCRPAAARAANHAAVVAVVA 57044


>gb|AAHK01000658.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053511321, whole genome
             shotgun sequence
          Length = 26958

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = +1

Query: 67    FLLDAY--KQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQE-KIAEGATCHLLDFASPERP 123
             F +DA   K+   G   PN  ++H+SS+  G  +       +  E     LLD ASP   
Sbjct: 19339 FAVDAQVVKKPSWGGSFPN--ILHLSSSSLGVQALPVCHTLETPEMTLKRLLDDASPSMA 19512

Query: 124   LVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDE 163
              VV   S T P  T ++ A ++ +E+ S     +L+ I E
Sbjct: 19513 EVVEIASKTDPRRTVEVAAQQREIEQSSYYCPDILLMIQE 19632


>gb|AAHK01003005.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053510587, whole genome
            shotgun sequence
          Length = 4097

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 109  GATCHLLDFASPERPLVVN----FGSATUPPFTSQLPAFRKLVEEFSSVAD 155
            GA C+++D  S E P V      F     PP  +  PA   L+EE+ S  D
Sbjct: 3783 GAGCNVVDCVSLEGPPVTAALCLFSFPVAPPLATSFPAVCGLIEEWFSALD 3935


>gb|AAHK01000034.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509525, whole genome
             shotgun sequence
          Length = 95133

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 109   GATCHLLDFASPERPLVVN----FGSATUPPFTSQLPAFRKLVEEFSSVAD 155
             GA C+++D  S E P V      F     PP  +  PA   L+EE+ S  D
Sbjct: 80803 GAGCNVVDCVSLEGPPVTAALCLFSFPVAPPLATSFPAVCGLIEEWFSALD 80651


>gb|AAHK01000709.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053510091, whole genome
            shotgun sequence
          Length = 25626

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 8    LLITLQILPVFFSNCLFLALY-----DSVILLKHVVLLLSRSKSTRG 49
            L + L +  + FS C+F AL+      +   L H+ LLL   K TRG
Sbjct: 5330 LSLALTLYAIIFSLCVFCALHLFDHPHTHTRLPHIQLLLQEEKQTRG 5190


>gb|AAHK01000056.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053508277, whole genome
             shotgun sequence
          Length = 85760

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 169   GWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFE 228
             G  I GD   S E +  Q    RC    Q LE  S+    R   DR    A  ++    +
Sbjct: 60693 GQRIVGDKQQSLEYRMRQQLLHRCQMEFQQLEEQSIERAERGGEDRASQGAEESFKERRD 60872

Query: 229   RVCIVQR 235
             RVC + R
Sbjct: 60873 RVCGIVR 60893


>gb|AAHK01001848.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053507487, whole genome
            shotgun sequence
          Length = 8991

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 109  GATCHLLDFASPERPLVVN----FGSATUPPFTSQLPAFRKLVEEFSSVAD 155
            GA C+++D  + E P V      F     PP T+  PA   L+EE+ S  D
Sbjct: 5531 GAGCNVVDCVTLEGPPVTAALCLFSFPVAPPLTT*FPAVCGLIEEWFSALD 5683


>gb|AAHK01000135.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053507603, whole genome
            shotgun sequence
          Length = 60056

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 53   RMLTSEGLRCVW-KSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGAT 111
            R+  S  L C   +S   D   +       P    VH S+ EGG++  +      +EGA+
Sbjct: 9187 RIFASFSLGCFGSRSSFSDGADEQPSRRKLPRIGSVHASACEGGNSRSSNFAASCSEGAS 9366

Query: 112  CHL 114
            C L
Sbjct: 9367 CRL 9375


>gb|AAHK01000060.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509429, whole genome
             shotgun sequence
          Length = 82431

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 82    PNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHL 114
             P    VH S+ EGG++  +      +EGA+C L
Sbjct: 32510 PRIGSVHASACEGGNSRSSNFSASCSEGASCRL 32608


>gb|AAHK01000501.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506835, whole genome
             shotgun sequence
          Length = 32562

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 1     MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKS 46
             +G+ S + +     + +FFS CL+L++Y S+ L  ++ + L  S S
Sbjct: 12192 VGLSSSEGVAGFHTVSLFFSVCLYLSIYLSIYLYIYIYIYLIYSSS 12329


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:13 PM
  Number of letters in database: 89,612,356
  Number of sequences in database:  32,746
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,304,002
Number of Sequences: 32746
Number of extensions: 570165
Number of successful extensions: 2910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2910
length of query: 265
length of database: 29,870,785
effective HSP length: 105
effective length of query: 160
effective length of database: 26,432,455
effective search space: 4229192800
effective search space used: 4229192800
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)