TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: genome.fa 572 sequences; 14,903,514 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQX01000454.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 32 0.29 gb|AAQX01000344.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 31 0.50 gb|AAQX01000082.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 28 2.5 gb|AAQX01000050.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 28 3.3 gb|AAQX01000399.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 27 7.2 gb|AAQX01000365.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 27 7.2 gb|AAQX01000509.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 27 9.5 gb|AAQX01000325.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 27 9.5 >gb|AAQX01000454.1| Phytophthora ramorum strain Pr102 Pramorum_Cont454, whole genome shotgun sequence Length = 187121 Score = 31.6 bits (70), Expect = 0.29 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +3 Query: 78 GEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPER 122 GE AP + +STEGGD+ G + E A L D ER Sbjct: 24321 GEAAPAADAGAAASTEGGDDGGGDEDAEETESAVADLTDEEMKER 24455 >gb|AAQX01000344.1| Phytophthora ramorum strain Pr102 Pramorum_Cont344, whole genome shotgun sequence Length = 250907 Score = 30.8 bits (68), Expect = 0.50 Identities = 29/101 (28%), Positives = 44/101 (43%) Frame = -2 Query: 112 CHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWA 171 CH+L S + +A PP + R++VE+ + V DE H W+ Sbjct: 84979 CHVLQAESKG----IETCTAFYPPHAGSIT--REVVEKLN----LCRVVTDEIHGD--WS 84836 Query: 172 IPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVA 212 +P + S F+ K Q C AQQL + + P+ R VA Sbjct: 84835 LPREGSYYFKGKALQKFGSMCLVAQQLAD--TTNPEMREVA 84719 >gb|AAQX01000082.1| Phytophthora ramorum strain Pr102 Pramorum_Cont82, whole genome shotgun sequence Length = 108873 Score = 28.5 bits (62), Expect = 2.5 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -1 Query: 182 VKKHQNQEDRCAAAQQLLERFSLPPQCRVVA 212 +K+H DR A+ + + +S+PP RV A Sbjct: 3180 IKRHHLSSDRVASPTKCIYSYSMPPNSRVAA 3088 >gb|AAQX01000050.1| Phytophthora ramorum strain Pr102 Pramorum_Cont50, whole genome shotgun sequence Length = 556376 Score = 28.1 bits (61), Expect = 3.3 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%) Frame = +1 Query: 21 NCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRML--------TSEGLRCVWK 65 +CLF + D V+ L + + S R RRML SE LRC WK Sbjct: 286066 SCLFCSAVDGVVELVLTSSSVRATSSLRASKRRMLEIWSDADALSE*LRCDWK 286224 >gb|AAQX01000399.1| Phytophthora ramorum strain Pr102 Pramorum_Cont399, whole genome shotgun sequence Length = 202332 Score = 26.9 bits (58), Expect = 7.2 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Frame = -2 Query: 34 LKHVVLLLSRSKSTR-GEWRRMLTSEGLR----------CVWKSFLLDAYKQVKLGEDAP 82 L HV L+ R + R G+WRR L R + ++ G DAP Sbjct: 51971 LSHVQKLVVRLELDRPGDWRRRLAVVAAR*QVSLVGTLAHLVGGEACESDNSADSGNDAP 51792 Query: 83 NSSVVHVS-----STEGGDNSGNGTQEKI 106 NSS H S G SG G E++ Sbjct: 51791 NSSSTHASRRAAHRIRGRSRSGVGRAERL 51705 >gb|AAQX01000365.1| Phytophthora ramorum strain Pr102 Pramorum_Cont365, whole genome shotgun sequence Length = 12966 Score = 26.9 bits (58), Expect = 7.2 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = -1 Query: 135 PFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAA 194 P T+ ++ ++ S +AD LL+ H S GW P + + K+ + A Sbjct: 7710 PNTNSSTIRQEAIQSDSVLADDLLI-----HLSSGWCCPKFNLVCLGTKRVMTSQKGLQA 7546 Query: 195 AQQLLERFSL 204 LLE FS+ Sbjct: 7545 TAVLLECFSV 7516 >gb|AAQX01000509.1| Phytophthora ramorum strain Pr102 Pramorum_Cont509, whole genome shotgun sequence Length = 79092 Score = 26.6 bits (57), Expect = 9.5 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 160 YIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLE 200 + D+ S+GW G SLS + Q QED C + LE Sbjct: 65245 FCDDHRGSEGW*RIGRRSLSGVFRHGQAQEDICTGTKCQLE 65123 >gb|AAQX01000325.1| Phytophthora ramorum strain Pr102 Pramorum_Cont325, whole genome shotgun sequence Length = 240192 Score = 26.6 bits (57), Expect = 9.5 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%) Frame = -3 Query: 43 RSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQ----VKLGEDAPNSSVVHVS----STEG 94 R TRG R + GL+ W S L + Q +L ED P ++ S + EG Sbjct: 39325 RGGGTRGSARWTAETRGLQWKWSSVLAEGGAQRTEDAELQEDPPGVTMRIKSQIRIAIEG 39146 Query: 95 GDNSGNGTQEKIAEGATCHL 114 G ++ G+ + TCHL Sbjct: 39145 GTSTEPGSTD-----*TCHL 39101 Database: genome.fa Posted date: Jan 19, 2010 5:07 PM Number of letters in database: 14,903,514 Number of sequences in database: 572 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,390,231 Number of Sequences: 572 Number of extensions: 86754 Number of successful extensions: 462 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 334 Number of HSP's gapped (non-prelim): 210 length of query: 265 length of database: 4,967,838 effective HSP length: 93 effective length of query: 172 effective length of database: 4,914,642 effective search space: 845318424 effective search space used: 845318424 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.6 bits)