TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01001663.1| Phytophthora sojae strain P6497 Psojae_Cont16...    30   2.9  
gb|AAQY01000549.1| Phytophthora sojae strain P6497 Psojae_Cont54...    30   2.9  

>gb|AAQY01001663.1| Phytophthora sojae strain P6497 Psojae_Cont1663, whole genome shotgun
              sequence
          Length = 168583

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 55     HFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIW 108
              HF    W+ T +S+   WF    +W  ++        AP  P + LS  RC +W
Sbjct: 152453 HFCGAGWLATGWSS---WF----KWSHVDPLRAASCPAPGAP*LLLSRPRCRLW 152593


>gb|AAQY01000549.1| Phytophthora sojae strain P6497 Psojae_Cont549, whole genome shotgun
             sequence
          Length = 157963

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 112   QGNRPLVLNFG---SCTUPSFMFKFDQFKRL 139
             QGNRPLV  FG   +CT PS M +  +  +L
Sbjct: 43047 QGNRPLVSGFGITCACTLPSAMIRIRRMHKL 42955


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,124,494
Number of Sequences: 5578
Number of extensions: 357829
Number of successful extensions: 1882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 925
length of query: 249
length of database: 26,017,032
effective HSP length: 104
effective length of query: 145
effective length of database: 25,436,920
effective search space: 3688353400
effective search space used: 3688353400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)