TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: genome.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQX01000438.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   6.6  
gb|AAQX01000569.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   8.6  

>gb|AAQX01000438.1| Phytophthora ramorum strain Pr102 Pramorum_Cont438, whole genome
             shotgun sequence
          Length = 107380

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = +2

Query: 36    RVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFW---FVLKVRWQRLEDTTELG--- 89
             R+KR     G++    R      DN++P F+S  +F+   ++ + R+Q  E    LG   
Sbjct: 33860 RIKRRQFDGGQQEPQKR------DNFVPQFYSRHWFFLYMYMHRYRYQLDERDLLLGKNV 34021

Query: 90    ---GLAPNCPVVRLSGQRCNIWEFMQ 112
                 + P CP +   G  C + E  Q
Sbjct: 34022 LYHAVHPLCPTLER*GGWCCLVEARQ 34099


>gb|AAQX01000569.1| Phytophthora ramorum strain Pr102 Pramorum_Cont569, whole genome shotgun
              sequence
          Length = 122205

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 85     TTELGGLAPNCPVVRLSGQRCNI 107
              T+++GG  P CP++ L+  + NI
Sbjct: 116071 TSDMGGCLPRCPLLALNTPQANI 116139


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:07 PM
  Number of letters in database: 14,903,514
  Number of sequences in database:  572
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,805,239
Number of Sequences: 572
Number of extensions: 69243
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 88
length of query: 249
length of database: 4,967,838
effective HSP length: 92
effective length of query: 157
effective length of database: 4,915,214
effective search space: 771688598
effective search space used: 771688598
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)