genewise output
Score 108.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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                  42 YKYLEMLKEADLKQMLHEK--GEA-FHHLRSKRELILAVLKLEKR--EE 
                     Y YL+ML E DL+QML+EK  G+      R K+EL+ AV KLE+R  EE 
                     YAYLDMLDEVDLQQMLYEKTHGQVPVSAFRDKKELVAAVRKLEEREDEE 
gi|146102387|re 1517 tgtcgacggggcccactgaacgcgcgagtcgaagcggggcacggcgggg 
                     acatattaatataattaaacagatctgctgaaaattcctgataagaaaa 
                     cccccggtggcagagataggtggggcctcccggggtcagcgcggcgcgg 


                  86 ALRKARVTDTVQHEVRVEYCSGX                           
                     A   ARV   +Q +  +                                 
                     ASFNARVMAAMQRKAALMQ-QNN          G:G[gga]         
gi|146102387|re 1664 gatagcgaggaccaggcac caaGGTGCAGA  Intron 1   GAGGA 
                     cgtacgttcctagacctta aaa <1-----[1731 : 2042]-1>   
                     ccccgtggggggcgccggg gcc                           


                 110 YRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGN 
                     Y +++E++ + L R+LP     Q+      +++VG  Y     R +    
                     YAKYFEDMKQQLQRTLP---NAQE------VRIVGGTYPTPPARALAAK 
gi|146102387|re 2045 tgattggaacccccacc   agcg      gcagggatcaccgcgcgga 
                     acaataataaatagctc   acaa      tgttggcacccccgctcca 
                     cggttatgggggatggc   caag      actgctccccatcccccgg 


                 159 ILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVA 
                       ST FLAS+ +++    L   LPP +  +I Q RGM++GAGF++NMV  
                     ACSTAFLASLGVALAGQQLV-FLPPTVLNFIAQQRGMLIGAGFLLNMVG 
gi|146102387|re 2165 gttagtcgtcgggcggcccg tcccagcatagcccgatagggttcaagg 
                     cgcccttcctgtctcgaatt ttcccttattcaaggtttgcgtttattg 
                     gcgcctgccctcctaagacg tgccctgccctggccggccttcgctgcc 


                 208 SSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQII        
                      +L Q+GAFEV L+G LI+SKL+ GAVPT   +   +L++ +        
                     GALGQTGAFEVSLDGELIFSKLQAGAVPTVAEIRRIVLQKTL        
gi|146102387|re 2309 ggcgcaggtggatgggcattaccggggcagggaccagccaac        
                     gctgacgctatgtagatttcatacgctcctcatggtttaact        
                     cccggctccggcgccatccaaggtgtagcggaatttcggggg        


//
Making a G in phase 1 intron
>gi|146102387|ref|NC_009419.1|:subseq(516239,4300).pep
YAYLDMLDEVDLQQMLYEKTHGQVPVSAFRDKKELVAAVRKLEEREDEEASFNARVMAAM
QRKAALMQQNNGYAKYFEDMKQQLQRTLPNAQEVRIVGGTYPTPPARALAAKACSTAFLA
SLGVALAGQQLVFLPPTVLNFIAQQRGMLIGAGFLLNMVGGALGQTGAFEVSLDGELIFS
KLQAGAVPTVAEIRRIVLQKTL
//
>gi|146102387|ref|NC_009419.1|:subseq(516239,4300).[1517:2434].sp
TACGCCTACCTCGACATGCTGGATGAGGTGGACCTACAGCAAATGCTATATGAAAAGACG
CATGGGCAGGTGCCGGTCAGCGCTTTCCGCGACAAGAAGGAGCTGGTTGCCGCAGTGCGC
AAGCTCGAGGAGCGCGAGGACGAGGAGGCCAGCTTCAACGCGCGTGTGATGGCGGCGATG
CAGCGCAAGGCCGCCCTGATGCAGCAGAACAACGGATACGCGAAGTATTTTGAAGATATG
AAGCAGCAGCTGCAACGTACGCTGCCCAACGCACAAGAGGTACGCATTGTGGGCGGTACC
TACCCCACCCCACCTGCCCGCGCCCTCGCCGCGAAGGCGTGCTCGACCGCCTTTCTGGCC
TCCCTCGGTGTCGCCCTTGCAGGACAGCAACTCGTGTTTCTGCCCCCCACCGTTCTGAAC
TTCATCGCTCAGCAGCGCGGCATGTTGATCGGCGCTGGTTTCTTGCTCAATATGGTCGGC
GGCGCCCTCGGGCAGACCGGTGCCTTCGAGGTGAGCTTGGACGGCGAACTTATCTTCTCA
AAACTGCAGGCTGGGGCTGTACCGACCGTGGCGGAAATACGTCGTATTGTCCTGCAGAAG
ACGCTG
//
gi|146102387|ref|NC_009419.1|:subseq(516239,4300)	GeneWise	match	1517	2434	117.59	+	.	gi|146102387|ref|NC_009419.1|:subseq(516239,4300)-genewise-prediction-1
gi|146102387|ref|NC_009419.1|:subseq(516239,4300)	GeneWise	cds	1517	1730	0.00	+	0	gi|146102387|ref|NC_009419.1|:subseq(516239,4300)-genewise-prediction-1
gi|146102387|ref|NC_009419.1|:subseq(516239,4300)	GeneWise	intron	1731	2042	0.00	+	.	gi|146102387|ref|NC_009419.1|:subseq(516239,4300)-genewise-prediction-1
gi|146102387|ref|NC_009419.1|:subseq(516239,4300)	GeneWise	cds	2043	2434	0.00	+	2	gi|146102387|ref|NC_009419.1|:subseq(516239,4300)-genewise-prediction-1
//