genewise output Score 111.31 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 8 ISFSLALLIAAFLAANAGSATNADNEATDYSSHRYKYLEMLKEADLKQM I SLALL+ F A A SA + + Y YL ML E DL+Q+ IVVSLALLF-VFAACRANSAHEVQ-PTQEGNKDPYAYLGMLDEVDLQQI gi|154340161|re 1469 aggtcgcct gtggtcgatgcggc cacggaagctgtcgacggggccca tttctcttt ttccggcaccaata ccaagaaacacatgttaatataat ctgaggttc gccgctatggtggg ctggacgcgcccctgctggcagga 57 LHEK--GEA-FHHLRSKRELILAVLKLEKREEALR LHEK G+ RSK EL+ AV K+E+RE+A LHEKTHGQVQVSAFRSKEELVAAVRKIEEREDAEV gi|154340161|re 1610 tcgaacgcgcgagtcaaggcggggcaaggcggggg taaacagatatgctggaaattcctgataagaacat ataggtaggggcccccgaggcgggtgtggcgcggc 89 ARVTDT-----VQHEVRVEYCSG A+ T + V H++ + YC+G K:S[agc] AKKTLSGRPLSVVHKLEILYCTG gi|154340161|re 1715 AGTTTCGA Intron 1 CAGGCgaaatagccctggcacgacttag <1-----[1716 : 1967]-1> caactgggctcttaatattagcg gggggtgtctgcgtggatatcca 108 XGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFI XGY +++E++ + L R LP +++VG Y R + XGYAKYFEDMKQQLQRVLP---------NAGDVQIVGGTYPTPPARALA gi|154340161|re 2039 tgtgattggaacccccgcc aggggcagggatcaccgcgcg ggacaataataaatagttc acgatattggcacccccgctc aacggttatggggaacggc cgttcatgttctccacccgcc 157 GNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNM + ST FLAS+ +++ L LPP +I Q RGM+VG GF++NM AKVCSTAFLASLGMALAGGQL-AFLPPAALNFIVQQRGMLVGTGFLLNM gi|154340161|re 2159 gagttagtcgtcgagcgggcc gtcccggcatagcccgacggagttcaa catgcccttcctgtctcggat cttcccctatttaaggtttgcgtttat gggcgactgccctgctcaagc gtgtcctgccttggtcggcctccggtg 206 VASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQII + SSL Q+GAFEV L+G LI+SKL+ GAVPT E + IL++ + IGSSLTQTGAFEVTLDGELIFSKLQAGAVPTVEVMRRIILQKTL gi|154340161|re 2303 agatcacaggtggatgggcattaccggggcagggaccaaccaac tggctcacgctatctagatttcatacgctcctattggtttaact ccctccgctccgtcgtcgtccggagtatagcggagctttgggat // Making a S in phase 1 intron >gi|154340161|ref|NC_009319.1|:subseq(120362,4500).pep IVVSLALLFVFAACRANSAHEVQPTQEGNKDPYAYLGMLDEVDLQQILHEKTHGQVQVSA FRSKEELVAAVRKIEEREDAEVSAKKTLSGRPLSVVHKLEILYCTGXGYAKYFEDMKQQL QRVLPNAGDVQIVGGTYPTPPARALAAKVCSTAFLASLGMALAGGQLAFLPPAALNFIVQ QRGMLVGTGFLLNMIGSSLTQTGAFEVTLDGELIFSKLQAGAVPTVEVMRRIILQKTL // >gi|154340161|ref|NC_009319.1|:subseq(120362,4500).[1469:2434].sp ATCGTTGTGTCACTGGCGCTTCTTTTCGTGTTCGCCGCGTGCCGTGCAAATTCGGCGCAT GAGGTGCAGCCCACTCAGGAGGGAAACAAGGACCCGTACGCCTACCTCGGTATGCTCGAT GAGGTGGACCTACAGCAGATATTACATGAAAAGACGCATGGACAGGTGCAGGTGAGCGCC TTCCGCAGCAAGGAAGAGCTGGTCGCGGCGGTGCGTAAGATTGAGGAGCGCGAGGACGCG GAGGTCAGCGCGAAGAAGACGTTGAGTGGGCGTCCCCTTTCGGTCGTGCATAAGCTGGAA ATTCTATATTGCACCGGATGAGGATACGCGAAGTATTTTGAAGATATGAAGCAGCAGCTA CAACGCGTGCTGCCCAACGCGGGTGATGTCCAAATTGTGGGTGGTACCTATCCCACCCCA CCCGCCCGCGCGCTCGCCGCGAAGGTGTGCTCGACAGCCTTTCTGGCCTCCCTCGGTATG GCCCTTGCCGGAGGACAGCTCGCGTTTCTGCCTCCCGCCGCTCTGAACTTCATTGTTCAG CAGCGTGGCATGCTGGTCGGCACTGGCTTCTTGCTGAATATGATCGGCAGCTCTCTCACC CAGACCGGTGCCTTCGAGGTTACCTTGGATGGCGAGCTTATCTTCTCGAAGCTACAGGCT GGAGCTGTACCGACCGTGGAGGTAATGCGCCGTATTATTCTGCAGAAGACACTT // gi|154340161|ref|NC_009319.1|:subseq(120362,4500) GeneWise match 1469 2434 124.29 + . gi|154340161|ref|NC_009319.1|:subseq(120362,4500)-genewise-prediction-1 gi|154340161|ref|NC_009319.1|:subseq(120362,4500) GeneWise cds 1469 1715 0.00 + 0 gi|154340161|ref|NC_009319.1|:subseq(120362,4500)-genewise-prediction-1 gi|154340161|ref|NC_009319.1|:subseq(120362,4500) GeneWise intron 1716 1967 0.00 + . gi|154340161|ref|NC_009319.1|:subseq(120362,4500)-genewise-prediction-1 gi|154340161|ref|NC_009319.1|:subseq(120362,4500) GeneWise cds 1968 2434 0.00 + 2 gi|154340161|ref|NC_009319.1|:subseq(120362,4500)-genewise-prediction-1 //