
genewise output
Score 41.54 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SelJ_tetraodon_    6 KLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILN 
                     +LAP++  +AG P++   VE   RVTQN+D  VA    +AR LE  ++  
                     RLAPLLLAFAGHPDLDQIVEACTRVTQNHDEAVAWARLSARVLEG-VVR 
scaffold_26:sub  200 ccgctccgtggccgcgcagggtacgacacgggggtgccagcgtgg ggc 
                     gtcctttctcgacataattacgcgtcaaaaactcgcgtgcgttag ttg 
                     cgaggggattcctcgcatggaccggggcccacgcggcgcctcggt cca 


SelJ_tetraodon_   55 GPDPTALESVIRQLRDPNRKQAQDLDQA------VVGHIHQVKE-NLSK 
                     G D     +V   L D  R  A+  D A      V GH++QV+    S  
                     GADVD--QAVKEALLDAQRLDAELDDPASEELYLVAGHLYQVRTLSFSS 
scaffold_26:sub  344 ggggg  cggaggctggcctgggcggcgtggctcgggcctcgcatatta 
                     gcata  actaacttacagtacataacccaatattcgataatgctgtcg 
                     tatac  gccagggatcgcgttagtttttgagtggttcccaggagccgt 


SelJ_tetraodon_   97 TPQELIPAVFVNTXGLPGAFQAALHGVLTATN----------------- 
                        + +  +  N    P ++Q  +H VL+                     
                     EIPDAVERLGKNCH-TPNSYQTPVHAVLSVLRRRADCLSPTTESLAPER 
scaffold_26:sub  485 gacggggccgaatc acattcacgcggttgtcccggtctcaagtcgcgc 
                     atcactagtgaaga ccacaacctacttcttgggcagtccccactccag 
                     gttccgggttactc tacgcgcggcgcgcaacgcaccaaggaggcgcgt 


SelJ_tetraodon_  129 ----YVQAVRDTMSCGGCTCSR----GSFIGACLGAQVGL--EGIPASW 
                         + + +R  M  GGC  SR    G+++GA L  + G   E +P SW 
                     AQALFAECMRGAMREGGCCASRCGVAGALLGAYLAGRCGSFEEFLPPSW 
scaffold_26:sub  629 gcgctggtacggacgggttgtctgggggctggtcggctgttggttccat 
                     cacttcagtggctgaggggccgggtcgcttgcatcggggctaattccgg 
                     agcgttacgcgcgaatcttgctttgctttgcctccgactttggcgcgcg 


SelJ_tetraodon_  168 SSRTQRY                                           
                      +RT  Y                                           
                     RARTLAY                                           
scaffold_26:sub  776 cgcacgt                                           
                     gcgctca                                           
                     cgcttct                                           


//
>scaffold_26:subseq(604722,5000).pep
RLAPLLLAFAGHPDLDQIVEACTRVTQNHDEAVAWARLSARVLEGVVRGADVDQAVKEAL
LDAQRLDAELDDPASEELYLVAGHLYQVRTLSFSSEIPDAVERLGKNCHTPNSYQTPVHA
VLSVLRRRADCLSPTTESLAPERAQALFAECMRGAMREGGCCASRCGVAGALLGAYLAGR
CGSFEEFLPPSWRARTLAY
//
>scaffold_26:subseq(604722,5000).[200:796].sp
CGCCTGGCACCGTTGCTGCTGGCATTTGCTGGCCACCCTGACCTGGACCAAATTGTGGAG
GCATGCACCCGGGTGACGCAGAACCACGACGAAGCCGTGGCCTGGGCGCGCCTGAGCGCC
CGTGTCTTGGAGGGTGTCGTCCGAGGTGCAGATGTAGACCAGGCCGTCAAAGAGGCGCTG
TTAGATGCCCAGCGCTTGGATGCTGAACTGGATGATCCTGCTTCTGAGGAACTGTATCTG
GTGGCTGGTCACCTCTACCAAGTGCGGACATTGAGCTTCTCGAGTGAGATTCCTGACGCC
GTGGAGCGGCTTGGTAAAAACTGTCACACTCCAAACTCGTACCAGACCCCGGTGCACGCG
GTCTTGTCCGTATTACGCCGGCGCGCAGACTGCCTATCACCGACGACAGAGTCGCTCGCG
CCCGAGCGTGCACAGGCCCTGTTTGCTGAATGCATGCGCGGGGCCATGCGAGAAGGTGGC
TGTTGTGCGTCCCGTTGTGGTGTGGCCGGTGCTCTTTTGGGCGCCTATCTCGCCGGGCGA
TGCGGTTCTTTTGAGGAGTTCTTGCCCCCGAGCTGGCGCGCGCGCACTCTTGCCTAT
//
scaffold_26:subseq(604722,5000)	GeneWise	match	200	796	71.49	+	.	scaffold_26:subseq(604722,5000)-genewise-prediction-1
scaffold_26:subseq(604722,5000)	GeneWise	cds	200	796	0.00	+	0	scaffold_26:subseq(604722,5000)-genewise-prediction-1
//
