Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./SelTryp.fa -t ./fastasubseq_Tcruzi_SELTRYP_2.fa]
Hostname: [ws101088.aulescm.upf.edu]

C4 Alignment:
------------
         Query:  SelTryp; hypothetical protein [Trypanosoma brucei TREU927] PARTIALLY FROM XP_844760.1
        Target: gi|70872757|gb|AAHK01001168.1|:subseq(9533,2647) Trypanosoma cruzi strain CL Brener tcruzi_1047053505163, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 466
   Query range: 1 -> 249
  Target range: 906 -> 1647

    2 : ArgAsnArgPheValArgIleSerPheSerLeuAlaLeuLeuIleAlaAlaPheLeuAlaAl :   22
        |||!.!! !||| !!  !:!!  !.!.! !!!!  !|||:!!!!:  !.!!  !:!!  !!.
        ArgThrLeuPhePheSerLeuLeuLeuIlePheLeuLeuValMetPheThrThrValHisGl
  907 : CGTACTCTTTTTTTTTCACTACTTCTAATATTTTTGTTGGTAATGTTTACAACCGTTCATGG :  967

   23 : aAsnAlaGlySerAlaThrAsnAlaAspAsnGluAlaThrAspTyrSerSerHisArgTyrL :   43
        !   ||||||..!! !  !!..! !   ::!!!:.!!  !! ! !!..!..!  !  !!:!|
        yAlaAlaGlyAspAspGlyArgAspThrSerAspThrGluGlyAspAspAspSerLeuPheL
  968 : TGCAGCTGGTGATGATGGCAGGGATACATCTGATACGGAGGGCGATGATGATTCTTTATTCA : 1030

   44 : ysTyrLeuGluMetLeuLysGluAlaAspLeuLysGlnMetLeuHisGluLysGlyGluAla :   63
        |||||||||||||||||:!!! !::!||||||::!||||||||||||||||||  !:!! !!
        ysTyrLeuGluMetLeuGluValSerAspLeuArgGlnMetLeuHisGluLysLysGlnPro
 1031 : AATATCTTGAAATGCTTGAGGTAAGTGACCTACGGCAGATGTTACATGAGAAGAAGCAACCG : 1090

   64 : PheHisHisLeuArgSerLysArgGluLeuIleLeuAlaValLeuLysLeuGluLysArgGl :   84
        |||||||||||||||||||||!:!|||||||||! !|||:!!:!!! !|||||||||!:!||
        PheHisHisLeuArgSerLysGlnGluLeuIleHisAlaIleIleThrLeuGluLysLysGl
 1091 : TTTCATCATTTACGATCCAAACAGGAACTTATTCATGCCATCATAACATTAGAAAAGAAGGA : 1153

   85 : u<-><-><->GluAlaLeuArgLysAlaArgValThrAspThrValGln<->HisGluValA :  101
        |         |||  !||||||::!  !|||! !||| ! .!!  !::!   |||! !:!!|
        uLysLeuValGluLysLeuArgArgArgArgAspThrLysAlaSerArgProHisValLeuA
 1154 : GAAGCTTGTTGAAAAATTAAGGCGACGACGAGACACAAAGGCAAGCAGACCGCATGTACTCC : 1216

  102 : rgValGluTyrCysSerGlyUnkGlyTyrArgArgHisTyrGluGluValAlaGluSerLeu :  121
        ||||||||||||||||||||   ||||||||||||||||||||||||:!!!.!.!.  !:!!
        rgValGluTyrCysSerGly***GlyTyrArgArgHisTyrGluGluMetValHisHisIle
 1217 : GTGTGGAATATTGTTCCGGATGAGGTTACCGGCGGCACTATGAAGAGATGGTACACCACATC : 1276

  122 : LeuArgSerLeuProProGluLeuArgGluGlnGlnLysGlyLysLysProPheIleLysPh :  142
        ! !|||||||||||||||               .!.|||..!:!!:!!|||.!!:!:|||||
        SerArgSerLeuProPro---------------AsnLysAsnGlnGluProIleLeuLysPh
 1277 : TCCCGTAGTTTGCCGCCA---------------AATAAGAATCAAGAACCAATTTTGAAGTT : 1324

  143 : eValGlyValValTyrSerValGlyAlaPheArgGluPheIleGlyAsnIleLeuSerThrG :  163
        |:!!  !  !|||||||||||||||  ! ! ||||||   ||||||:::.!!||||||  ! 
        eLeuProSerValTyrSerValGlyIleValArgGluThrIleGlySerPheLeuSerLeuL
 1325 : TCTTCCATCTGTTTACTCTGTAGGTATTGTACGGGAAACGATTGGTTCATTCTTGTCTCTTC : 1387

  164 : lyPheLeuAlaSerIleAlaIleSerPhePheAlaProPheLeuArgGlyAlaLeuProPro :  183
         !|||:!!||||||:!!  !|||.!!.!!  !||||||!:!!!!  !|||  !!!!||||||
        euPheIleAlaSerLeuIleIleGlyIleGlyAlaProTyrPheValGlyIlePheProPro
 1388 : TCTTTATTGCTTCACTTATTATTGGTATTGGTGCACCCTACTTTGTAGGGATATTTCCTCCG : 1447

  184 : HisIleAlaGluTrpIleGluGlnHisArgGlyMetValValGlyAlaGlyPheMetMetAs :  204
        :!!:!!!.!  !|||:!:||||||:!!|||  !|||:!!:!!!.!|||||||||:!:   ||
        AsnValValThrTrpValGluGlnAsnArgThrMetIleIleAlaAlaGlyPheValAlaAs
 1448 : AATGTTGTGACATGGGTGGAACAAAACCGTACAATGATCATTGCCGCTGGGTTTGTAGCAAA : 1510

  205 : nMetValAlaSerSerLeuLeuGlnSerGlyAlaPheGluValTyrLeuAsnGlySerLeuI :  225
        |:!::!!..!.!!|||:!!|||||||||||||||||||||:!!!:!:!!:!!! !!!!||||
        nLeuIleCysGlySerIleLeuGlnSerGlyAlaPheGluMetPheMetAspAspThrLeuI
 1511 : CCTTATATGTGGGAGTATTCTTCAGTCAGGTGCTTTTGAAATGTTTATGGATGATACGCTCA : 1573

  226 : leTyrSerLysLeuGluThrGlyAlaValProThrAlaGluThrLeuAlaAspHisIleLeu :  245
        ||!:!|||||||||:!!  !..!  !:!!  !:!!|||! !  !||||||!!:  !:!!:!!
        lePheSerLysLeuGlnGlnAsnLysMetLeuSerAlaValAspLeuAlaGluIleValIle
 1574 : TCTTTTCAAAGTTGCAGCAGAACAAAATGTTGTCAGCCGTAGATTTGGCAGAAATTGTAATA : 1633

  246 : ArgGlnIleIle :  249
        !:!  !:!!:!!
        GlnAlaLeuVal
 1634 : CAAGCGTTAGTC : 1647

vulgar:  1 249 . gi|70872757|gb|AAHK01001168.1|:subseq(9533,2647) 906 1647 + 466 M 83 249 G 0 9 M 13 39 G 0 3 M 30 90 G 5 0 M 117 351
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-03
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|70872757|gb|AAHK01001168.1|:subseq(9533,2647)	exonerate:protein2genome:local	gene	907	1647	466	+	.	gene_id 1 ; sequence  ; gene_orientation .
gi|70872757|gb|AAHK01001168.1|:subseq(9533,2647)	exonerate:protein2genome:local	cds	907	1647	.	+	.	
gi|70872757|gb|AAHK01001168.1|:subseq(9533,2647)	exonerate:protein2genome:local	exon	907	1647	.	+	.	insertions 12 ; deletions 5
gi|70872757|gb|AAHK01001168.1|:subseq(9533,2647)	exonerate:protein2genome:local	similarity	907	1647	466	+	.	alignment_id 1 ; Query  ; Align 907 2 249 ; Align 1165 85 39 ; Align 1207 98 90 ; Align 1297 133 351
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
