Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./SelJ.fa -t ./fastasubseq_Pinfestans_SelJ_2]
Hostname: [luke]

C4 Alignment:
------------
         Query: SelJ_tetraodon_nigroviridis 
        Target: supercont1.17:subseq(2032394,4500) of Phytophthora infestans
         Model: protein2genome:local
     Raw score: 140
   Query range: 110 -> 184
  Target range: 1996 -> 2218

  111 : GlyLeuProGlyAlaPheGlnAlaAlaLeuHisGlyValLeuThrAlaThrAsnTyrValGl :  131
        ..!|||||||||!.!.!.|||!.!:!!:!!  !! !:!!||||||:!!  !...||||||.!
        SerLeuProGlyValLeuGlnGlySerValPheValLeuLeuThrSerGlyGlyTyrValAs
 1997 : TCGTTGCCTGGTGTGCTGCAGGGGTCGGTGTTCGTTTTGCTGACCTCGGGCGGGTACGTGGA : 2057

  132 : nAlaValArgAspThrMetSerCysGlyGlyCysThrCysSerArgGlySerPheIleGlyA :  152
        .|||:!!|||!  !.!|||  !...||||||  !!.!|||||||||!.!! ! !!|||||||
        pAlaLeuArgAlaAsnMetLeuAlaGlyGlyAspAsnCysSerArgAlaIleValIleGlyA
 2058 : TGCGTTGCGTGCGAATATGCTGGCGGGCGGAGACAACTGCAGTCGCGCTATCGTCATCGGAG : 2120

  153 : laCysLeuGlyAlaGlnValGlyLeuGluGlyIleProAlaSerTrpSerSerArgThrGln :  172
        ||  !  !!.!|||     !|||  !!!:  !|||||||||..!|||!.!..!!:!|||:!!
        laValAlaAlaAlaAlaGlnGlyGlyAspThrIleProAlaGluTrpLysGluLysThrLys
 2121 : CGGTCGCCGCAGCGGCTCAAGGTGGTGACACCATACCTGCGGAGTGGAAGGAGAAGACCAAA : 2180

  173 : ArgTyrGluSerValLeuGluHisAlaLysLysIle :  184
          !|||  !..!||||||..!! !.!!:!!|||:!!
        ValTyrThrGlnValLeuSerLeuThrGluLysLeu
 2181 : GTTTACACACAAGTTCTGTCACTCACAGAGAAACTA : 2218

vulgar: SelJ_tetraodon_nigroviridis 110 184 . supercont1.17:subseq(2032394,4500) 1996 2218 + 140 M 74 222
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
supercont1.17:subseq(2032394,4500)	exonerate:protein2genome:local	gene	1997	2218	140	+	.	gene_id 1 ; sequence SelJ_tetraodon_nigroviridis ; gene_orientation .
supercont1.17:subseq(2032394,4500)	exonerate:protein2genome:local	cds	1997	2218	.	+	.	
supercont1.17:subseq(2032394,4500)	exonerate:protein2genome:local	exon	1997	2218	.	+	.	insertions 0 ; deletions 0
supercont1.17:subseq(2032394,4500)	exonerate:protein2genome:local	similarity	1997	2218	140	+	.	alignment_id 1 ; Query SelJ_tetraodon_nigroviridis ; Align 1997 111 222
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
