Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./SelJ.fa -t ./fastasubseq_Pinfestans_SelJ_1]
Hostname: [luke]

C4 Alignment:
------------
         Query: SelJ_tetraodon_nigroviridis 
        Target: supercont1.1:subseq(6755018,4500) of Phytophthora infestans:[revcomp]
         Model: protein2genome:local
     Raw score: 164
   Query range: 105 -> 184
  Target range: 2236 -> 1999

  106 : PheValAsnThrUnkGlyLeuProGlyAlaPheGlnAlaAlaLeuHisGlyValLeuThrAl :  126
        |||! !|||  !   ..!|||||||||!.!|||!!.|||!.!|||!!.  !:!!!!!..!  
        PheGlyAsnArgGlySerLeuProGlyGlyPheHisAlaValLeuGlnProLeuPheValLe
 2236 : TTCGGTAACCGTGGTTCGTTGCCTGGAGGGTTCCACGCTGTACTGCAGCCACTTTTTGTGCT : 2176

  127 : aThrAsnTyrValGlnAlaValArgAspThrMetSerCysGlyGlyCysThrCysSerArgG :  147
        !!.!:!!|||  !  !|||||||||!!:!.!!!:! ! ! |||||| !!|||||| !!|||!
        uAsnAspTyrProThrAlaValArgGluAsnIleIleGlyGlyGlyArgThrCysArgArgA
 2175 : GAACGACTACCCTACAGCCGTGCGTGAGAACATCATCGGAGGTGGACGCACATGTCGCCGTG : 2113

  148 : lySerPheIleGlyAlaCysLeuGlyAlaGlnValGlyLeuGluGlyIleProAlaSerTrp :  167
        .!! !|||||||||||||||!!!!.!||||||! !|||||||||!.!||||||! !.!!|||
        laMetPheIleGlyAlaCysPheAlaAlaGlnAspGlyLeuGluAlaIleProGluGlyTrp
 2112 : CCATGTTTATTGGTGCTTGCTTTGCTGCCCAGGATGGGTTAGAGGCGATCCCGGAAGGCTGG : 2053

  168 : SerSerArgThrGlnArgTyrGluSerValLeuGluHisAlaLysLysIle :  184
        ! !..!!:!||||||  !!:!!!:! !:!!  !! ! !!|||!.....:!:
        IleGlnLysThrGlnTyrPheAspPheIleGluAlaAspAlaSerSerLeu
 2052 : ATCCAAAAGACTCAATACTTTGACTTCATTGAGGCAGATGCCAGCTCTTTG : 2000

vulgar: SelJ_tetraodon_nigroviridis 105 184 . supercont1.1:subseq(6755018,4500) 2236 1999 - 164 M 79 237
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
supercont1.1:subseq(6755018,4500)	exonerate:protein2genome:local	gene	2000	2236	164	-	.	gene_id 1 ; sequence SelJ_tetraodon_nigroviridis ; gene_orientation .
supercont1.1:subseq(6755018,4500)	exonerate:protein2genome:local	cds	2000	2236	.	-	.	
supercont1.1:subseq(6755018,4500)	exonerate:protein2genome:local	exon	2000	2236	.	-	.	insertions 0 ; deletions 0
supercont1.1:subseq(6755018,4500)	exonerate:protein2genome:local	similarity	2000	2236	164	-	.	alignment_id 1 ; Query SelJ_tetraodon_nigroviridis ; Align 2237 106 237
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
