Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./Sel4.fa -t ./fastasubseq_Pfalciparum_Sel4_1]
Hostname: [ws101093.aulescm.upf.edu]

C4 Alignment:
------------
         Query: Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
        Target: Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)
         Model: protein2genome:local
     Raw score: 655
   Query range: 0 -> 135
  Target range: 2002 -> 2587

    1 : MetAspThrAsnGluAsnMetLysAsnValLysAspMetMetSerPheThrThrLysAsnIl :   21
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        MetAspThrAsnGluAsnMetLysAsnValLysAspMetMetSerPheThrThrLysAsnIl
 2003 : ATGGACACAAATGAAAATATGAAAAATGTAAAGGATATGATGTCCTTTACCACAAAGAATAT : 2063

   22 : eIleTyrIlePheIleGlyIleSerLeuLeuIlePheIleTyrLysIleLeuLysLysAsnL :   42
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        eIleTyrIlePheIleGlyIleSerLeuLeuIlePheIleTyrLysIleLeuLysLysAsnL
 2064 : AATATATATCTTTATCGGAATATCATTATTAATATTTATATATAAGATATTAAAAAAGAATA : 2126

   43 : ysLysAspAlaGluValLysArgAsnAsnGluIleSerIleLysMetLysLeuSerArgGlu :   62
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ysLysAspAlaGluValLysArgAsnAsnGluIleSerIleLysMetLysLeuSerArgGlu
 2127 : AAAAAGATGCAGAAGTTAAAAGGAATAATGAAATAAGTATAAAAATGAAATTATCACGAGAA : 2186

   63 : LysGlnLeuGlnGluLeuAspLysGluMetMetIleAsnLysGluLysMetLysGluGlnAs :   83
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        LysGlnLeuGlnGluLeuAspLysGluMetMetIleAsnLysGluLysMetLysGluGlnAs
 2187 : AAACAATTACAAGAATTAGATAAAGAAATGATGATTAACAAAGAAAAAATGAAAGAACAAAA : 2249

   84 : nIleLysLysAsnGluGluLysLysLysAspAlaAspGlnAlaLysProLysLeuGlySerL :  104
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        nIleLysLysAsnGluGluLysLysLysAspAlaAspGlnAlaLysProLysLeuGlySerL
 2250 : TATTAAAAAAAATGAAGAGAAAAAAAAAGATGCAGACCAAGCAAAACCAAAGTTGGGTTCTA : 2312

  105 : ysAspAsnSerSerPheAsnHisLeuAsnAspTyrSerAsnTyrTyrArgProSerLeuLys :  124
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ysAspAsnSerSerPheAsnHisLeuAsnAspTyrSerAsnTyrTyrArgProSerLeuLys
 2313 : AAGACAATTCATCATTTAATCATTTAAATGATTACTCAAATTATTATAGGCCGTCATTAAAA : 2372

  125 : AsnArgPhe  >>>> Target Intron 1 >>>>  TyrAsnAsnArgLysSerUnkArg :  135
        |||||||||            180 bp           ||||||||||||||||||   |||
        AsnArgPhe++                         -+TyrAsnAsnArgLysSer***Arg
 2373 : AATAGGTTTgt.........................ggTACAATAATCGCAAATCCTGACGA : 2585

vulgar: Sel4 0 135 . Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500) 2002 2587 + 655 M 127 381 5 0 2 I 0 176 3 0 2 M 8 24
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	gene	2003	2587	655	+	.	gene_id 1 ; sequence Sel4 ; gene_orientation +
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	cds	2003	2383	.	+	.	
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	exon	2003	2383	.	+	.	insertions 0 ; deletions 0
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	splice5	2384	2385	.	+	.	intron_id 1 ; splice_site "GT"
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	intron	2384	2563	.	+	.	intron_id 1
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	splice3	2562	2563	.	+	.	intron_id 0 ; splice_site "GG"
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	cds	2564	2587	.	+	.	
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	exon	2564	2587	.	+	.	insertions 0 ; deletions 0
Pfa3D7|chr14|2002.10.03|GENOMIC|TIGR:subseq(1059940,4500)	exonerate:protein2genome:local	similarity	2003	2587	655	+	.	alignment_id 1 ; Query Sel4 ; Align 2003 1 381 ; Align 2564 128 24
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
