Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./SelTryp.fa -t ./fastasubseq_Tbrucei_SelTryp_1]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelTryp; hypothetical protein [Trypanosoma brucei TREU927] PARTIALLY FROM XP_844760.1
        Target: Tb927_05_v4:subseq(292239,5000) [~/tryp/curated/chr5/Tb927_05_v4.embl] This data was sequenced at the Sanger Institute or TIGR
         Model: protein2genome:local
     Raw score: 1291
   Query range: 0 -> 259
  Target range: 1999 -> 2776

    1 : MetArgAsnArgPheValArgIleSerPheSerLeuAlaLeuLeuIleAlaAlaPheLeuAl :   21
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        MetArgAsnArgPheValArgIleSerPheSerLeuAlaLeuLeuIleAlaAlaPheLeuAl
 2000 : atgcgcaaccgatttgttcgcatctcattttccttggcgctcctgatagcagcctttttggc : 2060

   22 : aAlaAsnAlaGlySerAlaThrAsnAlaAspAsnGluAlaThrAspTyrSerSerHisArgT :   42
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        aAlaAsnAlaGlySerAlaThrAsnAlaAspAsnGluAlaThrAspTyrSerSerHisArgT
 2061 : agcgaatgctggcagtgctaccaatgccgataatgaagcgaccgactacagcagccaccgct : 2123

   43 : yrLysTyrLeuGluMetLeuLysGluAlaAspLeuLysGlnMetLeuHisGluLysGlyGlu :   62
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        yrLysTyrLeuGluMetLeuLysGluAlaAspLeuLysGlnMetLeuHisGluLysGlyGlu
 2124 : acaaatatcttgaaatgctaaaggaggcggatttgaagcaaatgctgcacgagaagggggag : 2183

   63 : AlaPheHisHisLeuArgSerLysArgGluLeuIleLeuAlaValLeuLysLeuGluLysAr :   83
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        AlaPheHisHisLeuArgSerLysArgGluLeuIleLeuAlaValLeuLysLeuGluLysAr
 2184 : gctttccatcacctgcggtcgaagcgggaacttattctcgccgttttgaaactcgaaaagcg : 2246

   84 : gGluGluAlaLeuArgLysAlaArgValThrAspThrValGlnHisGluValArgValGluT :  104
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        gGluGluAlaLeuArgLysAlaArgValThrAspThrValGlnHisGluValArgValGluT
 2247 : tgaggaggcactccgcaaggctcgggtaacggataccgtgcaacatgaggtgcgtgtggagt : 2309

  105 : yrCysSerGlyUnkGlyTyrArgArgHisTyrGluGluValAlaGluSerLeuLeuArgSer :  124
        |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
        yrCysSerGly***GlyTyrArgArgHisTyrGluGluValAlaGluSerLeuLeuArgSer
 2310 : actgctccggatgaggataccggcggcactacgaggaggtcgctgaaagcctccttcgaagc : 2369

  125 : LeuProProGluLeuArgGluGlnGlnLysGlyLysLysProPheIleLysPheValGlyVa :  145
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        LeuProProGluLeuArgGluGlnGlnLysGlyLysLysProPheIleLysPheValGlyVa
 2370 : ttgccgccggaattaagagagcagcagaaaggaaagaagccgtttatcaagtttgttggagt : 2432

  146 : lValTyrSerValGlyAlaPheArgGluPheIleGlyAsnIleLeuSerThrGlyPheLeuA :  166
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        lValTyrSerValGlyAlaPheArgGluPheIleGlyAsnIleLeuSerThrGlyPheLeuA
 2433 : tgtgtattctgtaggagcctttcgtgagttcattggtaacattcttagcacagggttcctcg : 2495

  167 : laSerIleAlaIleSerPhePheAlaProPheLeuArgGlyAlaLeuProProHisIleAla :  186
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        laSerIleAlaIleSerPhePheAlaProPheLeuArgGlyAlaLeuProProHisIleAla
 2496 : cctcgattgcaattagtttttttgccccatttttgaggggcgcgctcccacctcacattgct : 2555

  187 : GluTrpIleGluGlnHisArgGlyMetValValGlyAlaGlyPheMetMetAsnMetValAl :  207
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        GluTrpIleGluGlnHisArgGlyMetValValGlyAlaGlyPheMetMetAsnMetValAl
 2556 : gaatggattgagcagcaccgcggaatggtcgtgggagcgggatttatgatgaacatggtagc : 2618

  208 : aSerSerLeuLeuGlnSerGlyAlaPheGluValTyrLeuAsnGlySerLeuIleTyrSerL :  228
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        aSerSerLeuLeuGlnSerGlyAlaPheGluValTyrLeuAsnGlySerLeuIleTyrSerL
 2619 : gtcaagcttgcttcaatctggtgcctttgaggtatatctcaatggctcactcatctattcga : 2681

  229 : ysLeuGluThrGlyAlaValProThrAlaGluThrLeuAlaAspHisIleLeuArgGlnIle :  248
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ysLeuGluThrGlyAlaValProThrAlaGluThrLeuAlaAspHisIleLeuArgGlnIle
 2682 : agctagagacaggagctgtgccaactgcggagacgctagcagaccacatcctgcgccaaatt : 2741

  249 : IleSerGlyThrAlaAlaGlyThrArgThrAla :  259
        |||||||||||||||||||||||||||||||||
        IleSerGlyThrAlaAlaGlyThrArgThrAla
 2742 : atctctggtacagcagcaggaacgaggaccgca : 2776

vulgar:  0 259 . Tb927_05_v4:subseq(292239,5000) 1999 2776 + 1291 M 259 777
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Tb927_05_v4:subseq(292239,5000)	exonerate:protein2genome:local	gene	2000	2776	1291	+	.	gene_id 1 ; sequence  ; gene_orientation .
Tb927_05_v4:subseq(292239,5000)	exonerate:protein2genome:local	cds	2000	2776	.	+	.	
Tb927_05_v4:subseq(292239,5000)	exonerate:protein2genome:local	exon	2000	2776	.	+	.	insertions 0 ; deletions 0
Tb927_05_v4:subseq(292239,5000)	exonerate:protein2genome:local	similarity	2000	2776	1291	+	.	alignment_id 1 ; Query  ; Align 2000 1 777
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
