Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ../../exonerate/SelJ/SelJ.fa -t ./fastasubseq_Linfantum_SelJ_1_repetido.fa]
Hostname: [ws101138.aulescm.upf.edu]

C4 Alignment:
------------
         Query: SelJ_tetraodon_nigroviridis 
        Target: gi|146092665|ref|NC_009412.1|:subseq(1011311,4499) Leishmania infantum JPCM5 chromosome 28, complete sequence
         Model: protein2genome:local
     Raw score: 101
   Query range: 126 -> 184
  Target range: 3993 -> 4167

  127 : ThrAsnTyrValGlnAlaValArgAspThrMetSerCysGlyGlyCysThrCysSerArgGl :  147
        ..!!..!:!!.!|||!.!|||  !.!..!!!!: !!  !||||||   ||||||..!|||!.
        ValThrPheAlaGlnGlyValAlaGlnAlaIleArgLeuGlyGlyProThrCysGlnArgAl
 3994 : GTTACGTTTGCACAGGGAGTCGCGCAGGCGATCCGGCTCGGCGGTCCAACGTGCCAGCGAGC : 4054

  148 : ySerPheIleGlyAlaCysLeuGlyAlaGlnValGlyLeuGluGlyIleProAlaSerTrpS :  168
        !! !.!.:!!||||||   |||||||||:!!:!!|||:!!..!  !||||||  !..!||| 
        aMetLeuValGlyAlaLeuLeuGlyAlaLysLeuGlyValArgHisIleProMetGluTrpL
 4055 : TATGCTGGTTGGCGCGCTGCTGGGGGCGAAGCTTGGGGTGCGGCACATTCCGATGGAATGGC : 4117

  169 : erSerArgThrGlnArgTyrGluSerValLeuGluHisAlaLysLysIle :  184
         !|||  !|||     !:!!:!! !!|||! !  !   |||  !:!!:!:
        euSerAlaThrAlaAspHisLysProValSerThrMetAlaLeuGluVal
 4118 : TGAGCGCCACGGCCGACCACAAGCCCGTGTCCACGATGGCGCTGGAGGTG : 4167

vulgar: SelJ_tetraodon_nigroviridis 126 184 . gi|146092665|ref|NC_009412.1|:subseq(1011311,4499) 3993 4167 + 101 M 58 174
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|146092665|ref|NC_009412.1|:subseq(1011311,4499)	exonerate:protein2genome:local	gene	3994	4167	101	+	.	gene_id 1 ; sequence SelJ_tetraodon_nigroviridis ; gene_orientation .
gi|146092665|ref|NC_009412.1|:subseq(1011311,4499)	exonerate:protein2genome:local	cds	3994	4167	.	+	.	
gi|146092665|ref|NC_009412.1|:subseq(1011311,4499)	exonerate:protein2genome:local	exon	3994	4167	.	+	.	insertions 0 ; deletions 0
gi|146092665|ref|NC_009412.1|:subseq(1011311,4499)	exonerate:protein2genome:local	similarity	3994	4167	101	+	.	alignment_id 1 ; Query SelJ_tetraodon_nigroviridis ; Align 3994 127 174
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
