Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./Sel4.fa -t ./fastasubseq_Pyoellii_Sel4_1]
Hostname: [ws101093.aulescm.upf.edu]

C4 Alignment:
------------
         Query: Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
        Target: Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(0,3000) [revcomp]
         Model: protein2genome:local
     Raw score: 288
   Query range: 15 -> 130
  Target range: 1800 -> 1452

   16 : PheThrThrLysAsnIleIleTyrIlePheIleGlyIleSerLeuLeuIlePheIleTyrLy :   36
        .!!|||! !||||||:!::!:!:!|||.!!!!:  !  !! !!!!:!!||| !!:!!|||||
        LeuThrIleLysAsnValLeuPheIleIleMetIleAlaLeuPheIleIleValValTyrLy
 1800 : CTTACAATAAAAAATGTGTTGTTCATAATTATGATTGCATTATTTATTATAGTTGTTTATAA : 1740

   37 : sIleLeuLysLysAsnLysLysAspAlaGluValLysArgAsnAsnGluIleSerIleLysM :   57
        |  !:!!||| ! !!.!..|||  !:!!|||!.!||||||||||||||||||! !  !||||
        sTyrValLysTyrLysSerLysIleSerGluAlaLysArgAsnAsnGluIleTyrGluLysM
 1739 : ATATGTGAAATATAAGAGTAAAATTTCCGAAGCTAAACGAAATAATGAAATATATGAAAAAA : 1677

   58 : etLysLeuSerArgGluLysGlnLeuGlnGluLeuAspLysGluMetMetIleAsnLysGlu :   77
        |||||:!!|||||||||||||||||||||:!!|||!!::!!||||||!!:|||||||||:!!
        etLysIleSerArgGluLysGlnLeuGlnLysLeuGluGluGluMetIleIleAsnLysLys
 1676 : TGAAAATATCACGAGAAAAGCAATTACAAAAACTGGAAGAAGAAATGATAATTAATAAAAAG : 1617

   78 : LysMetLysGluGln<->AsnIleLysLysAsnGluGluLysLysLysAspAlaAspGlnAl :   97
        ||||||!!.|||.!.   !!.! !! ! ! !!.|||.!.!!.!!.|||     !|||..!:!
        LysMetAsnGluAsnLeuLysAsnThrAspLysGluAsnAsnAsnLysThrLeuAspSerSe
 1616 : AAAATGAATGAAAATCTTAAAAACACAGATAAGGAAAACAATAATAAAACATTAGACTCATC : 1554

   98 : aLysProLysLeuGlySerLysAspAsnSerSerPheAsnHisLeuAsnAspTyrSerAsnT :  118
        !! !||||||! !..!|||||||||!!.|||!!!|||!:!|||!!!!!.|||||||||||||
        rThrProLysSerAsnSerLysAspLysSerThrPheSerHisPheLysAspTyrSerAsnT
 1553 : TACACCAAAATCGAATTCTAAGGATAAATCAACATTTAGTCATTTTAAAGATTATTCGAATT : 1491

  119 : yrTyrArgProSerLeuLysAsnArgPheTyrAsnAsn :  130
        |||||!:!||||||:!!!:!:!!|||!!.||||||:!!
        yrTyrLysProSerIleArgAspArgLeuTyrAsnHis
 1490 : ATTATAAGCCGTCTATAAGAGATAGGTTATATAATCAT : 1453

vulgar: Sel4 15 130 . Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(0,3000) 1800 1452 - 288 M 67 201 G 0 3 M 48 144
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(0,3000)	exonerate:protein2genome:local	gene	1453	1800	288	-	.	gene_id 1 ; sequence Sel4 ; gene_orientation .
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(0,3000)	exonerate:protein2genome:local	cds	1453	1800	.	-	.	
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(0,3000)	exonerate:protein2genome:local	exon	1453	1800	.	-	.	insertions 3 ; deletions 0
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-DNA|Plasmodium_yoelii_TIGR:subseq(0,3000)	exonerate:protein2genome:local	similarity	1453	1800	288	-	.	alignment_id 1 ; Query Sel4 ; Align 1801 16 201 ; Align 1597 83 144
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
