Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./Sel4.fa -t ./fastasubseq_Pvivax_Sel4_1]
Hostname: [ws101093.aulescm.upf.edu]

C4 Alignment:
------------
         Query: Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
        Target: Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR:subseq(974082,4500) [revcomp]
         Model: protein2genome:local
     Raw score: 328
   Query range: 0 -> 126
  Target range: 2377 -> 1999

    1 : MetAspThrAsnGluAsnMetLysAsnValLysAspMetMetSerPheThrThrLysAsnIl :   21
        ||||||! !   ! !|||! !     !!.!|||!  :!!   ! !.!.|||..!||||||:!
        MetAspArgValGlyAsnLysAlaProAlaLysGlyValAspLeuLeuThrValLysAsnVa
 2377 : ATGGACAGGGTGGGGAACAAGGCTCCCGCAAAGGGAGTGGATTTACTGACAGTCAAAAATGT : 2317

   22 : eIleTyrIlePheIleGlyIleSerLeuLeuIlePheIleTyrLysIleLeuLysLysAsnL :   42
        :|||   :!! ! :!:|||:!!!!!  !!!!|||.!!|||||||||.!!:!!!:! ! ...|
        lIleLeuLeuValLeuGlyValThrAlaPheIleLeuIleTyrLysPheMetArgHisArgL
 2316 : GATCCTGCTAGTGTTGGGCGTTACAGCTTTTATACTTATTTATAAGTTCATGAGACATCGAA : 2254

   43 : ysLysAspAlaGluValLysArgAsnAsnGluIleSerIleLysMetLysLeuSerArgGlu :   62
        ||!:!! !:!!||| !!|||||||||!:!||||||..!! !|||||||||:!!|||||||||
        ysArgValSerGluPheLysArgAsnSerGluIleAspLysLysMetLysMetSerArgGlu
 2253 : AGAGAGTTTCGGAATTTAAGAGGAATAGCGAAATAGATAAAAAGATGAAAATGTCAAGGGAG : 2194

   63 : LysGlnLeuGlnGluLeuAspLysGluMetMetIleAsnLysGluLysMetLysGluGlnAs :   83
        |||::!||||||||||||!!:||||||||||||  !||||||:!!||||||!..||||||  
        LysArgLeuGlnGluLeuGluLysGluMetMetAlaAsnLysGlnLysMetSerGluGlnVa
 2193 : AAAAGGCTGCAAGAATTGGAAAAAGAAATGATGGCTAATAAACAGAAGATGAGCGAACAGGT : 2131

   84 : nIleLysLysAsnGluGluLysLysLysAspAlaAspGlnAlaLysProLysLeuGlySerL :  104
         ! !|||  !:!!!!::!!||| ! |||!    !|||..!! !|||||||||! !! !||||
        lAsnLysGlyAspAspLysLysAspLysAlaLeuAspSerAspLysProLysProAspSerL
 2130 : GAACAAGGGAGATGACAAAAAAGATAAAGCATTAGATTCGGACAAACCCAAACCAGATTCCA : 2068

  105 : ysAspAsnSerSerPheAsnHisLeuAsnAspTyrSerAsnTyrTyrArgProSerLeuLys :  124
        ||:!!||||||||||||!:!|||!!!!..|||!  |||||||||||||||||||||:!!!:!
        ysAsnAsnSerSerPheSerHisPheArgAspLeuSerAsnTyrTyrArgProSerIleArg
 2067 : AGAACAATTCGTCGTTCAGCCATTTTAGGGATTTATCAAACTACTACAGGCCGTCCATAAGA : 2008

  125 : AsnArg :  126
        ||||||
        AsnArg
 2007 : AATAGG : 2000

vulgar: Sel4 0 126 . Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR:subseq(974082,4500) 2377 1999 - 328 M 126 378
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR:subseq(974082,4500)	exonerate:protein2genome:local	gene	2000	2377	328	-	.	gene_id 1 ; sequence Sel4 ; gene_orientation .
Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR:subseq(974082,4500)	exonerate:protein2genome:local	cds	2000	2377	.	-	.	
Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR:subseq(974082,4500)	exonerate:protein2genome:local	exon	2000	2377	.	-	.	insertions 0 ; deletions 0
Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR:subseq(974082,4500)	exonerate:protein2genome:local	similarity	2000	2377	328	-	.	alignment_id 1 ; Query Sel4 ; Align 2378 1 378
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
