Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q ./Sel4.fa -t ./fastasubseq_Pknowlesi_Sel4_1]
Hostname: [ws101093.aulescm.upf.edu]

C4 Alignment:
------------
         Query: Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
        Target: Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger:subseq(1127493,4500) [revcomp]
         Model: protein2genome:local
     Raw score: 329
   Query range: 0 -> 126
  Target range: 2377 -> 1999

    1 : MetAspThrAsnGluAsnMetLysAsnValLysAspMetMetSerPheThrThrLysAsnIl :   21
        ||||||! !.!.!  |||!       !..!|||!  :!!   ! !.!.!:!..!||||||:!
        MetAspArgGluGlyAsnAsnAlaProThrLysGlyValAspLeuLeuSerValLysAsnVa
 2377 : ATGGACAGGGAGGGCAACAATGCTCCCACAAAGGGAGTGGATTTACTGAGCGTGAAAAATGT : 2317

   22 : eIleTyrIlePheIleGlyIleSerLeuLeuIlePheIleTyrLysIleLeuLysLysAsnL :   42
        :|||   :!! ! :!:|||:!!!!!! !!!!|||.!!|||||||||.!!:!!||| ! ...|
        lIleLeuLeuValLeuGlyValThrSerPheIleLeuIleTyrLysPheMetLysTyrArgL
 2316 : GATCCTGCTAGTGTTGGGCGTTACATCTTTTATACTTATTTATAAGTTCATGAAATATCGAA : 2254

   43 : ysLysAspAlaGluValLysArgAsnAsnGluIleSerIleLysMetLysLeuSerArgGlu :   62
        |||||! !:!!||| !!:!!|||!!.|||:!!|||..!  !|||||||||:!!|||||||||
        ysLysValSerGluPheGluArgLysAsnLysIleAspGluLysMetLysMetSerArgGlu
 2253 : AGAAAGTTTCAGAGTTTGAGAGGAAAAACAAAATAGATGAAAAGATGAAAATGTCAAGGGAA : 2194

   63 : LysGlnLeuGlnGluLeuAspLysGluMetMetIleAsnLysGluLysMetLysGluGlnAs :   83
        |||::!||||||||||||!!:|||||||||!!::!!|||||||||||||||!:!||||||! 
        LysArgLeuGlnGluLeuGluLysGluMetIleValAsnLysGluLysMetArgGluGlnMe
 2193 : AAAAGGCTGCAAGAATTGGAAAAAGAAATGATCGTTAATAAAGAAAAAATGAGAGAACAAAT : 2131

   84 : nIleLysLysAsnGluGluLysLysLysAspAlaAspGlnAlaLysProLysLeuGlySerL :  104
         ! !|||  !|||!!::!!||| ! |||!    !|||..!! !||| !!|||! !! !||||
        tAsnLysGlyAsnAspLysLysAspLysAlaLeuAspSerAspLysAlaLysProAspSerL
 2130 : GAACAAGGGAAATGACAAAAAAGATAAAGCACTAGACTCAGACAAAGCAAAACCAGATTCCA : 2068

  105 : ysAspAsnSerSerPheAsnHisLeuAsnAspTyrSerAsnTyrTyrArgProSerLeuLys :  124
        |||||||||||||||||!:!|||!!!!..|||!  |||||||||||||||||||||:!!!:!
        ysAspAsnSerSerPheSerHisPheArgAspLeuSerAsnTyrTyrArgProSerIleArg
 2067 : AGGATAATTCGTCGTTCAGCCATTTTAGGGATTTATCAAATTACTACAGGCCGTCAATAAGA : 2008

  125 : AsnArg :  126
        ||||||
        AsnArg
 2007 : AATAGG : 2000

vulgar: Sel4 0 126 . Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger:subseq(1127493,4500) 2377 1999 - 329 M 126 378
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger:subseq(1127493,4500)	exonerate:protein2genome:local	gene	2000	2377	329	-	.	gene_id 1 ; sequence Sel4 ; gene_orientation .
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger:subseq(1127493,4500)	exonerate:protein2genome:local	cds	2000	2377	.	-	.	
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger:subseq(1127493,4500)	exonerate:protein2genome:local	exon	2000	2377	.	-	.	insertions 0 ; deletions 0
Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmodium_knowlesi_Sanger:subseq(1127493,4500)	exonerate:protein2genome:local	similarity	2000	2377	329	-	.	alignment_id 1 ; Query Sel4 ; Align 2378 1 378
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
