TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: genome.fa 
           99,319 sequences; 85,114,155 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

81528.m00049|Leucine Rich Repeat family protein|1890|Identical t...    32   0.59 
81529.m00498|conserved hypothetical protein|894|Identical to: Ti...    30   1.7  
105537.m00002|conserved hypothetical protein|1113|                     29   2.9  
92030.m00091|conserved hypothetical protein|1971|Identical to: T...    28   5.0  

>81528.m00049|Leucine Rich Repeat family protein|1890|Identical to:
            TigrScan, GlimmerHMM gene predictions
          Length = 1890

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 129  YVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIP 164
            Y + +  T+  GG T    S + ACLGA  G++ IP
Sbjct: 1693 YKEGIEFTIRIGGDTNGNCSVVSACLGAMWGIDSIP 1800


>81529.m00498|conserved hypothetical protein|894|Identical to:
           TigrScan, GlimmerHMM gene predictions
          Length = 894

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 137 MSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITSHL 188
           +S G C C +   SFI ACL   + ++G   SW  +T R   V        SHL
Sbjct: 800 VSSGFCICGQSPPSFINACLHPSIAIDGKNFSW--KTNRLSRVSIDIIAANSHL 645


>105537.m00002|conserved hypothetical protein|1113|
          Length = 1113

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 139 CGGCTCSRGSFIGACLGAQVG 159
           C GC C  G  +G C+G  VG
Sbjct: 338 CAGCGCCAGCCVGCCVGCCVG 276


>92030.m00091|conserved hypothetical protein|1971|Identical to:
            TigrScan, GlimmerHMM gene predictions
          Length = 1971

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 65   IRQLRDPNRKQAQDLDQA--VVGHIHQVKENLSKTPQELIPA 104
            ++ L+D N+K   ++ +   +VG+ +QVK NL+   ++L  A
Sbjct: 1687 LKMLQDENKKLMNEISELTEIVGNYNQVKANLATAQEDLTKA 1812


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:02 AM
  Number of letters in database: 85,114,155
  Number of sequences in database:  99,319
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,054,861
Number of Sequences: 99319
Number of extensions: 148512
Number of successful extensions: 1248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of query: 189
length of database: 28,371,385
effective HSP length: 98
effective length of query: 91
effective length of database: 18,638,123
effective search space: 1696069193
effective search space used: 1696069193
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)