TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
         (135 letters)

Database: genome.fa 
           2960 sequences; 20,171,213 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-DNA...    73   4e-14
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00175|2002-09-10|ds-DNA...    28   0.93 
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00332|2002-09-10|ds-DNA...    28   0.93 
Plasmodium_yoelii_yoelii_str._17XNL|MALPY01002|2002-09-10|ds-DNA...    28   1.2  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00490|2002-09-10|ds-DNA...    28   1.6  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02251|2002-09-10|ds-DNA...    27   2.1  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY01545|2002-09-10|ds-DNA...    27   2.7  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02063|2002-09-10|ds-DNA...    27   3.5  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00288|2002-09-10|ds-DNA...    27   3.5  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00980|2002-09-10|ds-DNA...    27   3.5  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02401|2002-09-10|ds-DNA...    26   4.6  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY01430|2002-09-10|ds-DNA...    26   6.1  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00133|2002-09-10|ds-DNA...    26   6.1  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02036|2002-09-10|ds-DNA...    25   7.9  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY02606|2002-09-10|ds-DNA...    25   7.9  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00163|2002-09-10|ds-DNA...    25   7.9  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00886|2002-09-10|ds-DNA...    25   7.9  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY00933|2002-09-10|ds-DNA...    25   7.9  

>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02554|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 5959

 Score = 72.8 bits (177), Expect = 4e-14
 Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
 Frame = -2

Query: 36   KILKKNKKDAEVKRNNEISIKMKLSREKQLQELDXXXXXXXXXXXXXXXXXXXXXXXXXX 95
            K +K   K +E KRNNEI  KMK+SREKQLQ+L+                          
Sbjct: 1740 KYVKYKSKISEAKRNNEIYEKMKISREKQLQKLEEEMIINKKKMNENLKNTDKENNNKTL 1561

Query: 96   XXX-PKLGSKDNSSFNHLNDYSNYYRPSLKNRFYNN 130
                PK  SKD S+F+H  DYSNYY+PS+++R YN+
Sbjct: 1560 DSSTPKSNSKDKSTFSHFKDYSNYYKPSIRDRLYNH 1453


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00175|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 10856

 Score = 28.5 bits (62), Expect = 0.93
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 104  KDNSSFNHLNDYSNYYRPSLKNRFYNNRKSXR 135
            + N+S N  N+Y +  R S +N  YNNR   R
Sbjct: 6207 ESNNSINKYNEYEHINRFSQENYNYNNRNKIR 6112


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00332|2002-09-10|ds-
             DNA|Plasmodium_yoelii_TIGR
          Length = 46765

 Score = 28.5 bits (62), Expect = 0.93
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 101   LGSKDNSSFNHLNDYS--NYYRPSLKNRFYNNRKS 133
             + ++D  + N++N+YS  NY +  L N+F N +++
Sbjct: 21430 MNNEDTDASNYINNYSYNNYTKDELPNKFLNKKEA 21534


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY01002|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 4579

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 4    NENMKNVKDMMSFTTKNXXXXXXXXXXXXXXXKI-LKKNKKDAEVKRNNEISIKMKLSRE 62
            NE+ K ++   +F TKN                +    NKK   +K NN+ +IK K S +
Sbjct: 4207 NEDRKKMEKKENFDTKNNTDMCNSNGENPKNETVNTNMNKKSENIKGNNDKNIKKKESNK 4028

Query: 63   KQLQE 67
              +++
Sbjct: 4027 TNIEK 4013


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00490|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 8371

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 36   KILKKNKKDAEVKRNNEISIKMKLSREKQLQEL 68
            K +KKNKK  +    NE +IKM   + KQL +L
Sbjct: 3366 KTIKKNKKHLKNLFKNEKNIKMNKKKVKQLIKL 3464


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02251|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 2486

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +3

Query: 36   KILKKNKKDAEVKRNNEISIKMKLSREKQLQE 67
            K L++ KK+ + KRNNEI+I+ K +++ + +E
Sbjct: 1164 KELEEVKKELDNKRNNEIAIQPKKNKKIKKKE 1259


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY01545|2002-09-10|ds-
             DNA|Plasmodium_yoelii_TIGR
          Length = 17213

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 103   SKDNSSFNHLNDYSNYYRPSLKN--RFYNNR 131
             S D+  FNH+N+Y   Y  + KN   + NN+
Sbjct: 15439 STDDIDFNHMNNYEKKYYSTYKNEENYSNNQ 15531


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02063|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 13338

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 106  NSSFNHLNDYSNYYRPSLKN 125
            N+S+++ N YSN Y+P L N
Sbjct: 8815 NTSYSNNNSYSNTYKPFLTN 8756


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00288|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 24146

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 100  KLGSKDNSSFNHLNDYSNYYRP-SLKNRFYNN 130
            +L S +N+ F+  N+Y+N Y+    +N+F NN
Sbjct: 4244 ELNSDNNTIFDENNEYNNLYKNYETQNQFNNN 4339


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00980|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 9229

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +1

Query: 36   KILKKNKKDAEVKRNNEISIKMKLSRE 62
            K L++ KK+ + KRNNEI+I+ K +++
Sbjct: 8158 KELEEVKKELDNKRNNEIAIRPKNNKK 8238


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02401|2002-09-10|ds-
           DNA|Plasmodium_yoelii_TIGR
          Length = 4556

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 104 KDNSSFNHLNDYSNYYRPSLKNRFYN 129
           K NS+ NH+ D +NY+     +R YN
Sbjct: 125 KLNSNNNHIIDTNNYWNNPYNSRVYN 202


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY01430|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 15070

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 108  SFNHLNDYSNYYRPSLKNRFY 128
            S NH+N Y+N+Y   + N  Y
Sbjct: 5565 SLNHINHYNNFYFFPINNSIY 5503


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00133|2002-09-10|ds-
             DNA|Plasmodium_yoelii_TIGR
          Length = 19590

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 36    KILKKNKKDAEVKRNNEISIKMKLSREK 63
             K+LKK KK    KRNN I++   +  ++
Sbjct: 17223 KLLKKKKKKLLSKRNNSINVVKSIENKE 17140


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02036|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 2992

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 103  SKDNSSFNH-LNDYSNYYRPSLKNRFYNN 130
            + DN+S+N  L+ +S YY     N F+NN
Sbjct: 1087 NNDNNSYNKVLSVFSKYYTNFGNNTFFNN 1173


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY02606|2002-09-10|ds-
           DNA|Plasmodium_yoelii_TIGR
          Length = 2417

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 116 SNYYRPSLKNRFYNNRKSXR 135
           +N+Y PS++N  YN +++ R
Sbjct: 370 TNWYFPSIQNTMYNKKRTYR 429


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00163|2002-09-10|ds-
             DNA|Plasmodium_yoelii_TIGR
          Length = 17915

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 36    KILKKNKKDAEVKRNNEISIKMKLSREKQLQEL 68
             KIL+KNKKD+E K  +     ++ ++++ + +L
Sbjct: 17300 KILQKNKKDSEEKNKHNKLTDIEQNKKEIISQL 17202


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00886|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 17996

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 103  SKDNSSFNHLNDYSNYYRPSLKNRFYNNRK 132
            +++N + N+L   +NY +   ++ FY+NR+
Sbjct: 4937 TQNNDNLNYLESKNNYDKREDQDYFYSNRR 4848


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00933|2002-09-10|ds-
           DNA|Plasmodium_yoelii_TIGR
          Length = 4904

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 38  LKKNKKDAEVKRNNEISIKMKLSREKQLQ 66
           LKKNK D++V +NN  S  +   +++ L+
Sbjct: 413 LKKNKIDSKVNKNNSESSNLASKKKEYLK 499


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:02 AM
  Number of letters in database: 20,171,213
  Number of sequences in database:  2960
  
Lambda     K      H
   0.308    0.124    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,605,224
Number of Sequences: 2960
Number of extensions: 29328
Number of successful extensions: 422
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of query: 135
length of database: 6,723,737
effective HSP length: 86
effective length of query: 49
effective length of database: 6,469,177
effective search space: 316989673
effective search space used: 316989673
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)