TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
         (135 letters)

Database: genome.fa 
           36 sequences; 32,855,403 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   4.3  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    27   5.6  

>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 26.9 bits (58), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 103    SKDNSSFNHLNDYSNYYRPSLKNRFYNN 130
              +KDN   NH+N   NYY  +   ++Y+N
Sbjct: 288098 AKDNQQPNHVNTKPNYYGGNGVPQYYHN 288181


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 26.6 bits (57), Expect = 5.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 99     PKLGSKDNSSFNHLNDYSNYYRP 121
              P+   K + S  H ND+SN YRP
Sbjct: 685930 PREAKK*DESIPHRNDHSNTYRP 685862


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:01 AM
  Number of letters in database: 32,855,403
  Number of sequences in database:  36
  
Lambda     K      H
   0.308    0.124    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,271,690
Number of Sequences: 36
Number of extensions: 4693
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 10,951,801
effective HSP length: 89
effective length of query: 46
effective length of database: 10,948,597
effective search space: 503635462
effective search space used: 503635462
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)