TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           99,319 sequences; 85,114,155 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

89416.m00091|hypothetical protein|1176|                                33   0.26 
93904.m00224|NAC domain containing protein|1485|Identical to: Ti...    30   2.2  
87844.m00050|Endonuclease/Exonuclease/phosphatase family protein...    30   2.2  
83992.m00254|hypothetical protein|558|Identical to: TigrScan, Gl...    30   2.2  
85473.m00028|conserved hypothetical protein|2130|                      30   3.8  

>89416.m00091|hypothetical protein|1176|
          Length = 1176

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 19/94 (20%), Positives = 37/94 (39%)
 Frame = +1

Query: 159 ILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEV 218
           I++  F++S A SFF       +  H  +W+     M V    M     S+++   A+  
Sbjct: 199 IITIFFISSFAFSFFITPSENIIKSHAIDWVNDFIQMTVQNDIMYKAFNSTIISLFAYGF 378

Query: 219 YLNGSLIYSKLETGAVPTAETLADHILRQIISGT 252
           Y   ++ +     G + T     D     ++ G+
Sbjct: 379 YSIATIFFYTPNVGVITTLTIFLDRSFVSMLYGS 480


>93904.m00224|NAC domain containing protein|1485|Identical to:
           TigrScan, GlimmerHMM gene predictions
          Length = 1485

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
 Frame = +1

Query: 43  KYLEMLKEADL-KQMLHEKGEAFHHLRSKRELILAVLK-----LEKREEALRKARVTDT- 95
           KY + L++A+L K  L ++ E +  +++  E    VLK     ++KR ++ + +  T+  
Sbjct: 865 KYKQKLEDAELEKTELLKQIEIYKDIQTDHEKQEKVLKDQISEIQKRIDSGKASEETENK 1044

Query: 96  VQHEVRVEYCSGXGYRRHYEEVA--ESLLRSLPPELREQQKGKKPFIKFVG-----VVYS 148
           V+   R+   S   Y    E+    E+ +R L  +L + +    PF+KFVG     V+Y 
Sbjct: 1045VKKMNRMLEKSNMLYAELQEKYDKNETRVRELEKQLHKARIPGIPFVKFVGPKATFVLYD 1224

Query: 149 VGAFRE 154
            G F+E
Sbjct: 1225NGIFQE 1242


>87844.m00050|Endonuclease/Exonuclease/phosphatase family
            protein|1644|Identical to: GlimmerHMM gene prediction;
            Covered by: TigrScan gene prediction
          Length = 1644

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 56   MLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTD 94
            ++H +  A  HL+S+   IL++L+    + AL+K R+TD
Sbjct: 1139 VIHSQTRAISHLQSQITTILSILRTFFTQMALQKFRITD 1255


>83992.m00254|hypothetical protein|558|Identical to: TigrScan,
           GlimmerHMM gene predictions
          Length = 558

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
 Frame = +1

Query: 46  EMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYC 105
           E+LKE   KQ    K  A    R ++E      + E+ EE  ++A   + ++  + VE  
Sbjct: 142 EILKEKREKQKEISKDRA----REEKEKEKERKRQEREEEQKKRAEELEKIKATIPVEEL 309

Query: 106 SGXGYRRHYEEVAESLLRSLPPE-----------LREQQKGKKPFIKFVGVVYSVGAFRE 154
                ++      +  +R  PPE           + ++ +      KF   V  V   R 
Sbjct: 310 ELLYPQK------QPKIREAPPERFLCPNPGVQLVPKKARRTDASFKFEDFVEFVKPLRT 471

Query: 155 FIGNILSTGFLASIAISFFAPFL 177
           ++GN +  GFL ++ +  F  F+
Sbjct: 472 YVGNTVFNGFLTAVGVCVFIFFV 540


>85473.m00028|conserved hypothetical protein|2130|
          Length = 2130

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
 Frame = +1

Query: 31   DNEATDYSSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKA 90
            D  +TDYS HR K ++  K++D      E  +  H  R K ++     +  K+ +   + 
Sbjct: 1168 DEYSTDYSKHRTKTVK--KDSDSSNKYSEYSDISHASRRKADVSENSERKSKKSKTKSQT 1341

Query: 91   RVTDTVQ--HEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKG 135
                 V+   E+  ++      +  Y E+  ++  +L  +  +++KG
Sbjct: 1342 DKDQKVKSNDELSDKHSEDFQEKSRYVEIKPNISENLTQKTEKEEKG 1482


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:02 AM
  Number of letters in database: 85,114,155
  Number of sequences in database:  99,319
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,237,337
Number of Sequences: 99319
Number of extensions: 207199
Number of successful extensions: 1548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of query: 259
length of database: 28,371,385
effective HSP length: 102
effective length of query: 157
effective length of database: 18,240,847
effective search space: 2863812979
effective search space used: 2863812979
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)