TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           2960 sequences; 20,171,213 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_yoelii_yoelii_str._17XNL|MALPY00235|2002-09-10|ds-DNA...    29   2.4  
Plasmodium_yoelii_yoelii_str._17XNL|MALPY01375|2002-09-10|ds-DNA...    28   4.1  

>Plasmodium_yoelii_yoelii_str._17XNL|MALPY00235|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 3944

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 43   KYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEK 82
            KY  M K  +LK +LH KGEA++HL     L L + K  K
Sbjct: 1062 KY*IMAK--NLKNILHGKGEAYYHLLKISTLFLLLEKSMK 949


>Plasmodium_yoelii_yoelii_str._17XNL|MALPY01375|2002-09-10|ds-
            DNA|Plasmodium_yoelii_TIGR
          Length = 3707

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 31   DNEA--TDYSSHRYKYLEMLKEADLKQMLHEKGEAF 64
            DNE   +DY   RYK   +LK +   QM+ E G+ +
Sbjct: 3011 DNEIGNSDYKCERYKMRNILKRSFTAQMIEEMGKIY 2904


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:02 AM
  Number of letters in database: 20,171,213
  Number of sequences in database:  2960
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,181,201
Number of Sequences: 2960
Number of extensions: 48628
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 116
length of query: 259
length of database: 6,723,737
effective HSP length: 95
effective length of query: 164
effective length of database: 6,442,537
effective search space: 1056576068
effective search space used: 1056576068
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)