TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           4347 sequences; 16,926,281 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_gallinaceum|Pg_2265551.c000241699.Contig1|2007-01-03|...    30   0.88 
Plasmodium_gallinaceum|Pg_2265551.c000127926.Contig1|2007-01-03|...    27   9.7  

>Plasmodium_gallinaceum|Pg_2265551.c000241699.Contig1|2007-01-03|ds-
            DNA|Plasmodium_gallinaceum_Sanger
          Length = 1818

 Score = 30.0 bits (66), Expect = 0.88
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 32   NEATDYSSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEA 86
            NE ++   + +KY + +KEA L   + +    F++    + +I   L   +REE+
Sbjct: 1050 NEVSNLHYNSFKYEDYIKEAQLNNCVSDGNNIFNNSNRNKNIIQDPLIFNRREES 886


>Plasmodium_gallinaceum|Pg_2265551.c000127926.Contig1|2007-01-03|ds-
            DNA|Plasmodium_gallinaceum_Sanger
          Length = 4056

 Score = 26.6 bits (57), Expect = 9.7
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +1

Query: 202  MMNMVASSLLQSGAFEVYLNGSLIYS 227
            ++++V ++LL+  +F ++LN SLI+S
Sbjct: 3391 LLSLVFTTLLKFSSFLIFLNSSLIFS 3468


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:01 AM
  Number of letters in database: 16,926,281
  Number of sequences in database:  4347
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,325,730
Number of Sequences: 4347
Number of extensions: 37806
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of query: 259
length of database: 5,642,093
effective HSP length: 93
effective length of query: 166
effective length of database: 5,237,822
effective search space: 869478452
effective search space used: 869478452
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)