TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           697 sequences; 71,881,135 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_91                                                            52   1e-06
scaffold_102                                                           44   3e-04

>scaffold_91
          Length = 338364

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
 Frame = -2

Query: 99     EVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGN 158
              E+ +EYC+   Y+  Y+++  +LL   P +           I  +G  Y +GA ++ +  
Sbjct: 200972 EILIEYCTS*SYKESYQKLENALLN*YPNK-----------INVIG*PYPIGA*KQLLV* 200826

Query: 159    ILS-TGFLASIAISFFAPFLRGALPPHIAEWIEQHR---GMVVGAGFMMNMVASSLLQSG 214
               L+   + + I +  F   L+  L     ++I  ++   G+++  GF  N +  +L  +G
Sbjct: 200825 CLTYIQYGSLIVLVLFDSILKSKLSLW-EQYISPNKMRVGILIYIGF--NFII*NLQSTG 200655

Query: 215    AFEVYLNGSLIYSKLETGAVPT 236
              AFEV +NG LI+SKL TG +PT
Sbjct: 200654 AFEVTING*LIHSKLATG*MPT 200589


>scaffold_102
          Length = 310338

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
 Frame = +2

Query: 140    IKFVGVVYSVGAFREFIGNILST---GFLASIA-----ISFFAPFLRGALPPHIAEWIEQ 191
              ++ +G+ Y +G  +E +  +L+    GF+A +      IS  + F R  + P   ++   
Sbjct: 105239 VEVMGMPYPLG*GKEILVQLLTIIQYGFIAGLIFFDK*ISEMSNFWRTNISPSRLKY--- 105409

Query: 192    HRGMVVGAGFM----MNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETL 240
                      GF+    +N V + L  SGAFE+++N  L++SK+ +G +PT +TL
Sbjct: 105410 --------GFLGYIALNFVITQLSSSGAFEIFVND*LVHSKISSG*MPTMDTL 105544


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:01 AM
  Number of letters in database: 71,881,135
  Number of sequences in database:  697
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,403,676
Number of Sequences: 697
Number of extensions: 162343
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 25
length of query: 259
length of database: 23,960,378
effective HSP length: 104
effective length of query: 155
effective length of database: 23,887,890
effective search space: 3702622950
effective search space used: 3702622950
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)