TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927] PARTIALLY FROM XP_844760.1 (259 letters) Database: genome.fa 36 sequences; 32,153,582 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value gi|146102387|ref|NC_009419.1| Leishmania infantum JPCM5 chromoso... 108 4e-24 gi|146097266|ref|NC_009416.1| Leishmania infantum JPCM5 chromoso... 31 1.0 gi|146085604|ref|NC_009404.1| Leishmania infantum JPCM5 chromoso... 30 1.3 gi|146091359|ref|NC_009411.1| Leishmania infantum JPCM5 chromoso... 29 3.9 gi|146105420|ref|NC_009420.1| Leishmania infantum JPCM5 chromoso... 28 6.6 >gi|146102387|ref|NC_009419.1| Leishmania infantum JPCM5 chromosome 35, complete sequence Length = 2109708 Score = 108 bits (270), Expect = 4e-24 Identities = 59/155 (38%), Positives = 90/155 (58%) Frame = +1 Query: 95 TVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFRE 154 + HE+ V YC+G GY +++E++ + L R+LP ++ VG Y R Sbjct: 518239 SAMHELEVLYCTG*GYAKYFEDMKQQLQRTLPNAQE---------VRIVGGTYPTPPARA 518391 Query: 155 FIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSG 214 ST FLAS+ ++ L LPP + +I Q RGM++GAGF++NMV +L Q+G Sbjct: 518392 LAAKACSTAFLASLGVALAGQQLV-FLPPTVLNFIAQQRGMLIGAGFLLNMVGGALGQTG 518568 Query: 215 AFEVYLNGSLIYSKLETGAVPTAETLADHILRQII 249 AFEV L+G LI+SKL+ GAVPT + +L++ + Sbjct: 518569 AFEVSLDGELIFSKLQAGAVPTVAEIRRIVLQKTL 518673 Score = 81.3 bits (199), Expect = 7e-16 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 5/184 (2%) Frame = +3 Query: 81 EKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFI 140 + E A D QHEV V Y GY +E + + EL+E + P + Sbjct: 515853 DSAEPAAAGGSDVDEAQHEVLVLYNQANGYDSKFEVLRK--------ELQESEAVSLPNL 516008 Query: 141 ---KFVGVVYSVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVV 197 K +G Y + R I L F ++ ++ L+ +P + + RG++ Sbjct: 516009 ADFKIIGQAYPMSPRRVLISKALQGAFFGTLGLALMGDQLK-FIPESVLAVLRARRGLIT 516185 Query: 198 GAGFMMNMVASSLLQSGAFEVYLNGSLIYSKLE-TGAVPTAETLADHIL-RQIISGTAAG 255 GFM+N+++ + LQ+ AFEV+L+G LIYS L +G VPTAE L++ +L R ++ A Sbjct: 516186 STGFMLNVLSRAALQNNAFEVFLDGELIYSALNASGRVPTAELLSNLLLERTLLKDYYAA 516365 Query: 256 TRTA 259 +TA Sbjct: 516366 KKTA 516377 Score = 47.4 bits (111), Expect = 1e-05 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 5/63 (7%) Frame = +1 Query: 42 YKYLEMLKEADLKQMLHEKGEA---FHHLRSKRELILAVLKLEKR--EEALRKARVTDTV 96 Y YL+ML E DL+QML+EK R K+EL+ AV KLE+R EEA ARV + Sbjct: 517756 YAYLDMLDEVDLQQMLYEKTHGQVPVSAFRDKKELVAAVRKLEEREDEEASFNARVMAAM 517935 Query: 97 QHE 99 Q + Sbjct: 517936 QRK 517944 >gi|146097266|ref|NC_009416.1| Leishmania infantum JPCM5 chromosome 32, complete sequence Length = 1687682 Score = 30.8 bits (68), Expect = 1.0 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = +3 Query: 56 MLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYC 105 +LH HHLR + + +L VL+ ++ +L T ++RV+ C Sbjct: 346233 ILHGVPRVLHHLRDRGKSLLVVLRKKRNRRSLLSGAARATHAVDIRVDSC 346382 Score = 28.5 bits (62), Expect = 5.1 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +1 Query: 57 LHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCS 106 L G A HHLR+ L L++++R E RKA D +VR+ S Sbjct: 1002352 LQTHGHAVHHLRNIGASYLQPLRVQERHEKKRKA--ADEKHSQVRLRLWS 1002495 Score = 28.1 bits (61), Expect = 6.6 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +1 Query: 83 REEALRKARVTDTVQHEVRVEYCSGXGYRRH 113 R R +R+ + H+ C+G G+RRH Sbjct: 1360918 RPSLQRSSRILPALHHQAEERRCNGQGHRRH 1361010 >gi|146085604|ref|NC_009404.1| Leishmania infantum JPCM5 chromosome 20, complete genome Length = 766771 Score = 30.4 bits (67), Expect = 1.3 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -2 Query: 220 LNGSLIYSKLETGAVPTAETLADHILRQII 249 L+G LI+SKL+ GAVPT + +L++ + Sbjct: 686499 LDGELIFSKLQAGAVPTVAEIRRIVLQKTL 686410 >gi|146091359|ref|NC_009411.1| Leishmania infantum JPCM5 chromosome 27, complete sequence Length = 959754 Score = 28.9 bits (63), Expect = 3.9 Identities = 18/53 (33%), Positives = 31/53 (58%) Frame = +2 Query: 194 GMVVGAGFMMNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILR 246 G++ G+ ++++A SLL+ G L GSL+ L G++ + LAD +LR Sbjct: 48113 GLLAGSLLRLSLLAGSLLRLGL----LAGSLLRLSLLAGSLLSLGLLADSLLR 48259 >gi|146105420|ref|NC_009420.1| Leishmania infantum JPCM5 chromosome 36, complete sequence Length = 2620359 Score = 28.1 bits (61), Expect = 6.6 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +2 Query: 47 MLKEADLKQMLHEKGEAF-HHLRSKRELILAVLKLEKREEALRKARVTD 94 M EA+L Q+ +G A HHLR+ REL + + EKRE L + R D Sbjct: 1945265 MNDEAELDQL---RGRAEQHHLRTLRELDRELEEEEKREGRLLEGRGAD 1945402 Database: genome.fa Posted date: Feb 10, 2010 10:01 AM Number of letters in database: 32,153,582 Number of sequences in database: 36 Lambda K H 0.321 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,454,117 Number of Sequences: 36 Number of extensions: 119804 Number of successful extensions: 731 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 683 Number of HSP's gapped (non-prelim): 104 length of query: 259 length of database: 10,717,860 effective HSP length: 98 effective length of query: 161 effective length of database: 10,714,332 effective search space: 1725007452 effective search space used: 1725007452 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)