TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: genome.fa 
           130 sequences; 29,361,466 total letters

Searching................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Tb927_11_01_v4 [~/tryp/curated/chr11/Tb927_11_01_v4.embl] This d...    30   1.4  
Tb927_07_v4 [~/tryp/curated/chr7/Tb927_07_v4.embl] This data was...    30   2.3  
Tb927_08_v4 [~/tryp/curated/chr8/Tb927_08_v4.embl] This data was...    28   5.2  
tryp_X-48f04.q1c [~/tryp/curated/chr10/tryp_X-48f04.q1c.embl] Th...    28   8.8  

>Tb927_11_01_v4 [~/tryp/curated/chr11/Tb927_11_01_v4.embl] This data was
               sequenced at the Sanger Institute or TIGR
          Length = 4977082

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +3

Query: 72      PPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQG 131
               P IC+SD  ++ +  S + V +  K  F     + GP   +E + P    S+ + D   G
Sbjct: 4031427 PSICMSDMFQIISPRSFERVQNKAKKLFLPS--QTGPVLPAEQLRPIQTVSKDVTDAPAG 4031600

Query: 132     NRP-----LVLNFGSCTXPPFMARMSAF 154
               NRP     +   F S   PP  + M+ F
Sbjct: 4031601 NRPPG**TMAGAFPSPVTPPLRSTMTKF 4031684


>Tb927_07_v4 [~/tryp/curated/chr7/Tb927_07_v4.embl] This data was sequenced
               at the Sanger Institute or TIGR
          Length = 2205233

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 53      QPEPEVELNSEGEEVPPDDPPI 74
               +P+P   ++S GEEVPP DP I
Sbjct: 1485103 RPKPPASISSTGEEVPPLDPII 1485168


>Tb927_08_v4 [~/tryp/curated/chr8/Tb927_08_v4.embl] This data was sequenced
               at the Sanger Institute or TIGR
          Length = 2481190

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 108     PAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTXPPFMARMSA 153
               P P   +VLP+G +S   LD      PL +   +    P   R+SA
Sbjct: 1781184 PPPYVTIVLPEGVRSAAELDLTHTQSPLAVYAAATASNPIEVRVSA 1781321


>tryp_X-48f04.q1c [~/tryp/curated/chr10/tryp_X-48f04.q1c.embl] This
            data was sequenced at the Sanger Institute or TIGR
          Length = 12252

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 19   CLVLFPR----FLGTAFMLWLLDFLCIRKHFLG 47
            CL LF      FLG+ F+L+L  FL  R  FLG
Sbjct: 7691 CLCLFCHLSLLFLGSLFLLFLFGFLTQRAPFLG 7789


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:02 AM
  Number of letters in database: 29,361,466
  Number of sequences in database:  130
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,554,359
Number of Sequences: 130
Number of extensions: 208684
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 324
length of query: 278
length of database: 9,787,155
effective HSP length: 98
effective length of query: 180
effective length of database: 9,774,415
effective search space: 1759394700
effective search space used: 1759394700
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)