TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: genome.fa 
           14 sequences; 23,462,190 total letters

Searching..............done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-DNA|Plasmod...    28   5.4  
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|...    27   9.3  
Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-DNA|Plasmod...    27   9.3  

>Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-
              DNA|Plasmodium_knowlesi_Sanger
          Length = 973297

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 45     FLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNR 81
              F G       E + E + EGEE P DD     +DDNR
Sbjct: 872142 FSGISNDDDGEEDDEADDEGEEYPEDDGECNGNDDNR 872252


>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-
              DNA|Plasmodium_knowlesi_Sanger
          Length = 3128370

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 42     RKHFLGRRRRGQPEPEVELNSEGEE-VPPDDPPI 74
              R+H   RRR  + + +++   E EE VP +DPP+
Sbjct: 861289 REHCSKRRRTHKTDTKLKTEGEEEEEVPSEDPPV 861390


>Plasmodium_knowlesi_strain_H|PK4.chr05|2007-02-22|ds-
              DNA|Plasmodium_knowlesi_Sanger
          Length = 1324984

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 50     RRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLK 89
              R+GQP P+V   + GE    DDP + +   NR+  L + K
Sbjct: 921395 RKGQPSPQVGQTAYGELFWEDDPFVRLRRANRVNHLDNRK 921276


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:01 AM
  Number of letters in database: 23,462,190
  Number of sequences in database:  14
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,805,205
Number of Sequences: 14
Number of extensions: 155956
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 83
length of query: 278
length of database: 7,820,730
effective HSP length: 97
effective length of query: 181
effective length of database: 7,819,372
effective search space: 1415306332
effective search space used: 1415306332
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)