TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.40 of Phytophthora infestans                                36   0.23 
supercont1.8 of Phytophthora infestans                                 30   9.7  

>supercont1.40 of Phytophthora infestans
          Length = 1445775

 Score = 35.8 bits (81), Expect = 0.23
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -3

Query: 181    WVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLD-TMANSSSSAYGAYFERLYVIQ 239
              W T  SPY+IP   ++   +    +   G P C L+++  MA++ S A       L+  Q
Sbjct: 636724 WATAFSPYVIPMAGTMGRTMVIPGIRDSGFPSCLLIMNHGMASADSEARKM---ALFTNQ 636554

Query: 240    SGTIMYQGGRGPDGYQVSELRTW 262
               G   Y+ G     + V+  RTW
Sbjct: 636553 QGVWNYESGT----WDVAPGRTW 636497


>supercont1.8 of Phytophthora infestans
          Length = 3946259

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 13      CAQTASCLVLFPRFLGTAFMLWLLDFLCIR 42
               CA T  CL    +F+GT F  W     CIR
Sbjct: 2683095 CADTTYCLRRVCKFIGTCFFAWSESACCIR 2683184


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:01 AM
  Number of letters in database: 228,543,505
  Number of sequences in database:  4921
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,666,984
Number of Sequences: 4921
Number of extensions: 1663463
Number of successful extensions: 5796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 3022
Number of HSP's gapped (non-prelim): 3787
length of query: 278
length of database: 76,181,168
effective HSP length: 112
effective length of query: 166
effective length of database: 75,630,016
effective search space: 12554582656
effective search space used: 12554582656
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)