TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete (278 letters) Database: genome.fa 36 sequences; 32,153,582 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value gi|146086295|ref|NC_009405.1| Leishmania infantum JPCM5 chromoso... 32 0.67 gi|146095756|ref|NC_009415.1| Leishmania infantum JPCM5 chromoso... 31 0.87 gi|146098313|ref|NC_009417.1| Leishmania infantum JPCM5 chromoso... 31 1.1 gi|146091359|ref|NC_009411.1| Leishmania infantum JPCM5 chromoso... 31 1.1 gi|146089230|ref|NC_009409.1| Leishmania infantum JPCM5 chromoso... 28 5.6 gi|146102387|ref|NC_009419.1| Leishmania infantum JPCM5 chromoso... 28 7.4 gi|146097266|ref|NC_009416.1| Leishmania infantum JPCM5 chromoso... 28 7.4 >gi|146086295|ref|NC_009405.1| Leishmania infantum JPCM5 chromosome 21, complete sequence Length = 684862 Score = 31.6 bits (70), Expect = 0.67 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -3 Query: 141 SCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRV 200 +C PP + + AF+R D + + + HP D VT + QHR L +V Sbjct: 97109 ACIVPPKVRQQFAFRRGAEDADDRADAVRVRVARVHPDDEHVT------VAQHRQLPAQV 96948 Query: 201 SAA 203 AA Sbjct: 96947 DAA 96939 >gi|146095756|ref|NC_009415.1| Leishmania infantum JPCM5 chromosome 31, complete sequence Length = 1744348 Score = 31.2 bits (69), Expect = 0.87 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Frame = -2 Query: 58 VELNSEGEEVPPDDPP-----ICVSDDNRLCTLASLKAVWHGQ 95 V LNS+ EVPP+ PP C D N +C V HG+ Sbjct: 175497 VALNSDEAEVPPNPPPGAAGVACDGDANGVCLGGGAVRVLHGE 175369 >gi|146098313|ref|NC_009417.1| Leishmania infantum JPCM5 chromosome 33, complete sequence Length = 1331449 Score = 30.8 bits (68), Expect = 1.1 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Frame = +2 Query: 22 LFPRFLGTAFMLWLLDFLCIRKHFL-----GRRRRGQPEPEVE 59 ++PR G+A ++WLL FL +R FL R RR P P ++ Sbjct: 995486 VYPRT*GSA*IVWLLAFLFLRPFFLTRLVHARTRRPVPMPSLQ 995614 Score = 30.8 bits (68), Expect = 1.1 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Frame = -3 Query: 150 RMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW----VTTDSPYIIPQHRSLEDRVSAARV 205 R+S F RL ++ F + + A P G V+T P +P R E+ +A+ Sbjct: 187616 RVSPFVRLCHLHRLPSPFFL-QLSRAVPGVGR*PCAVSTLLPSRLPMKRFREEADAASE- 187443 Query: 206 LQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQS 240 + GA + V + +SSSS Y YFE ++ I S Sbjct: 187442 -RAGAHDASDVTSAVRSSSSSPYALYFEVIFGITS 187341 >gi|146091359|ref|NC_009411.1| Leishmania infantum JPCM5 chromosome 27, complete sequence Length = 959754 Score = 30.8 bits (68), Expect = 1.1 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 146 PFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQH 193 PF+AR+S+ L++ D+ L ++ P DGW +P + H Sbjct: 584696 PFVARLSSSPPLLSCNFADLHMLCLFPSLPRPDDGWAGGHTPPCVASH 584553 Score = 27.7 bits (60), Expect = 9.6 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +3 Query: 58 VELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAH 104 VE S +VPP PP+ VS R LA + V H + AH Sbjct: 657276 VESGSPLLQVPPRQPPLQVSRSRRCRELADVMVVAHVHACTRARHAH 657416 >gi|146089230|ref|NC_009409.1| Leishmania infantum JPCM5 chromosome 25, complete sequence Length = 872158 Score = 28.5 bits (62), Expect = 5.6 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +2 Query: 42 RKHFLGRRRRGQPEPEVELNSEGEEVPPDDPP 73 R+ FLGRRRR QP S PD PP Sbjct: 618587 RRRFLGRRRRPQPRAARRCPSCATLPRPDRPP 618682 Score = 27.7 bits (60), Expect = 9.6 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +2 Query: 183 TTDSPYIIPQHRSLEDRVSAARVLQQG---APGCALVLDTMANSSSSA 227 T P +P S+ VSA+RVL +P C V+ + SSSS+ Sbjct: 319142 TCQEPPSMPSRTSVSTGVSASRVLADSLLLSPSCNNVVSQLRGSSSSS 319285 >gi|146102387|ref|NC_009419.1| Leishmania infantum JPCM5 chromosome 35, complete sequence Length = 2109708 Score = 28.1 bits (61), Expect = 7.4 Identities = 14/33 (42%), Positives = 14/33 (42%) Frame = +2 Query: 245 YQGGRGPDGYQVSELRTWLERYDEQLHGARPRR 277 Y G D Q LR WL HG RPRR Sbjct: 448097 YLAQHGHDSVQ*QLLRRWLRLVRSVAHGTRPRR 448195 >gi|146097266|ref|NC_009416.1| Leishmania infantum JPCM5 chromosome 32, complete sequence Length = 1687682 Score = 28.1 bits (61), Expect = 7.4 Identities = 20/54 (37%), Positives = 21/54 (38%) Frame = +2 Query: 24 PRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVS 77 P FL L L DF C R F R R P P + PP PP C S Sbjct: 436265 PPFLCECLSLCLCDFFCSRSRFSCRHRCPLPSPNL-----AATYPP--PPRCRS 436405 Database: genome.fa Posted date: Feb 10, 2010 10:01 AM Number of letters in database: 32,153,582 Number of sequences in database: 36 Lambda K H 0.322 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,328,119 Number of Sequences: 36 Number of extensions: 398488 Number of successful extensions: 1691 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1595 Number of HSP's gapped (non-prelim): 296 length of query: 278 length of database: 10,717,860 effective HSP length: 99 effective length of query: 179 effective length of database: 10,714,296 effective search space: 1917858984 effective search space used: 1917858984 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)