TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: genome.fa 
           14 sequences; 23,462,190 total letters

Searching..............done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_...    28   5.1  
Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|...    28   6.6  

>Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-
               DNA|Plasmodium_knowlesi_Sanger
          Length = 3159096

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 190     DRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAF 227
               D CA  ++ L   S PP C +           A+G AF
Sbjct: 2388959 DSCAILRETLVAISCPPHCLISGTTFGTTFGTAFGTAF 2389072


>Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-
              DNA|Plasmodium_knowlesi_Sanger
          Length = 3128370

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 171    AIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVAD 213
              AIP   S    V  H + E+R  A++Q L R +   QC  + +
Sbjct: 943857 AIPFSESSLLSVPCHSSFEERYIASRQTLGRINFSGQCHAIQE 943985



 Score = 27.3 bits (59), Expect = 8.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 160    YIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCA 193
              Y     P DGW +   SS SF  K+  +   RC+
Sbjct: 405423 YAQSGLPYDGWRVNFKSSFSFPCKQGNSSACRCS 405524


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:01 AM
  Number of letters in database: 23,462,190
  Number of sequences in database:  14
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,084,640
Number of Sequences: 14
Number of extensions: 121728
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 47
length of query: 265
length of database: 7,820,730
effective HSP length: 96
effective length of query: 169
effective length of database: 7,819,386
effective search space: 1321476234
effective search space used: 1321476234
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)