TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: genome.fa 
           130 sequences; 29,361,466 total letters

Searching................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Tb927_04_v4 [~/tryp/curated/chr4/Tb927_04_v4.embl] This data was...    32   0.30 
Tb927_10_v4 [~/tryp/curated/chr10/Tb927_10_v4.embl] This data wa...    28   7.5  
Tb927_11_01_v4 [~/tryp/curated/chr11/Tb927_11_01_v4.embl] This d...    27   9.8  
Tb927_09_v4 [~/tryp/curated/chr9/Tb927_09_v4.embl] This data was...    27   9.8  

>Tb927_04_v4 [~/tryp/curated/chr4/Tb927_04_v4.embl] This data was
              sequenced at the Sanger Institute or TIGR
          Length = 1590432

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 41     ILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLK 76
              IL   E    +  P+ S   WIP+FFS  YF FVL+
Sbjct: 130425 ILLWLEDLTYSSTPYTSSSWWIPSFFSPPYFTFVLR 130532


>Tb927_10_v4 [~/tryp/curated/chr10/Tb927_10_v4.embl] This data was
              sequenced at the Sanger Institute or TIGR
          Length = 4054025

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = -2

Query: 36     RVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAP 93
              +   N L    K G+T +  ++ + W+    S QY W   +     + +  +  GL P
Sbjct: 456406 KASHNTLTAPRKCGVTDHSRYNVNRWLHVHKSAQYLWIATRPASHHMAENVQ--GLHP 456239


>Tb927_11_01_v4 [~/tryp/curated/chr11/Tb927_11_01_v4.embl] This data was
               sequenced at the Sanger Institute or TIGR
          Length = 4977082

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 60      NWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV-RLSGQRCNIW 108
               +W+P+F STQ    V + R ++L+DT +    A +C +  RL+  R N W
Sbjct: 4059288 SWLPSFISTQ----VGRGRERKLKDT*KWWRSARDCALFNRLAMPRRNCW 4059151


>Tb927_09_v4 [~/tryp/curated/chr9/Tb927_09_v4.embl] This data was sequenced
               at the Sanger Institute or TIGR
          Length = 3057547

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 70      YFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRC 105
               + W  +K RW + + +   G    + P + L+G RC
Sbjct: 1143216 FAWSCMKSRWNQKKHSVSNGNRCSSLPYLCLAGSRC 1143109


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:02 AM
  Number of letters in database: 29,361,466
  Number of sequences in database:  130
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,314,213
Number of Sequences: 130
Number of extensions: 141277
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 334
length of query: 249
length of database: 9,787,155
effective HSP length: 97
effective length of query: 152
effective length of database: 9,774,545
effective search space: 1485730840
effective search space used: 1485730840
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)