TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel2  protein; PFI1515w Plasmodium falciparum # QUERY
         (229 letters)

Database: genome.fa 
           99,319 sequences; 85,114,155 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

80892.m00265|hypothetical protein|2292|Identical to: TigrScan, G...    36   0.034
85232.m00122|hypothetical protein|759|                                 31   1.4  
80599.m00058|hypothetical protein|1320|Identical to: GlimmerHMM ...    30   1.8  
92921.m00252|hypothetical protein|1491|Identical to: TigrScan, G...    30   3.1  
85889.m00384|hypothetical protein|1422|Identical to: TigrScan, G...    30   3.1  
95305.m00227|hypothetical protein|783|                                 29   4.1  
92995.m00073|hypothetical protein|1293|Identical to: TigrScan, G...    29   4.1  
93878.m00249|conserved hypothetical protein|1188|Identical to: G...    29   4.1  
88546.m00307|hypothetical protein|1893|Identical to: GlimmerHMM ...    29   4.1  
87719.m00231|hypothetical protein|4254|Identical to: TigrScan, G...    29   5.4  
86492.m00136|Dynein heavy chain family protein|12027|Identical t...    29   5.4  
93210.m00007|Glutenin, high molecular weight subunit PW212 precu...    28   7.0  
92498.m00042|hypothetical protein|1164|Identical to: TigrScan, G...    28   7.0  
88864.m00137|hypothetical protein|2805|Identical to: TigrScan, G...    28   7.0  
88830.m00010|conserved hypothetical protein|7017|Identical to: T...    28   7.0  
88065.m00021|hypothetical protein|2937|Identical to: TigrScan, G...    28   7.0  
86622.m00281|conserved hypothetical protein|1518|Identical to: T...    28   7.0  
82032.m00103|hypothetical protein|591|Identical to: TigrScan, Gl...    28   9.2  

>80892.m00265|hypothetical protein|2292|Identical to: TigrScan,
           GlimmerHMM gene predictions
          Length = 2292

 Score = 36.2 bits (82), Expect = 0.034
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = +1

Query: 167 EKMRKKKIIVSSIMFLAYNIIYSILCNTNEIHVYQNKNLIYKDYFNEYFF 216
           EK+ K + IVSS     +N+IYS +C  N I V +++++I    +N YFF
Sbjct: 7   EKISKAREIVSST---GHNVIYSDVCYQNSISVDKSQSIILLTDYNLYFF 147


>85232.m00122|hypothetical protein|759|
          Length = 759

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 59  KKNNQISIFLCRSUQSQYIINKIKNYFDILNKGRETEIYFENNNYIVDNDQKYILFLMSI 118
           KKN++    LC+  Q  YI+       +I+ K ++      N  Y ++N + YI  L+SI
Sbjct: 448 KKNDKFKTILCKLYQITYILES----SNIIVKSQKPGEVILNKEYFIENQKIYIHPLLSI 615


>80599.m00058|hypothetical protein|1320|Identical to: GlimmerHMM gene
            prediction; Covered by: TigrScan gene prediction
          Length = 1320

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 168  KMRKKKIIVSSIMFLAYNIIYSILCNTNEIHVYQNKNLIYKDYFNEYFFIQ 218
            K R+ KII+    ++       I CN+N   +      +Y D+FN++FFIQ
Sbjct: 1131 KNRRNKIIIDRT-YIK*ITSNKICCNSNNF*LNLE*FRVYFDFFNQFFFIQ 982


>92921.m00252|hypothetical protein|1491|Identical to: TigrScan,
            GlimmerHMM gene predictions
          Length = 1491

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 37   SSFLKSSYEL--LFVQKDVLLPHIKKNNQISIFLCRSUQSQYIINKIKNY 84
            SS    +YE+  L ++K V    + KN   ++F  +  +SQYIIN +K+Y
Sbjct: 1324 SSIFLENYEIASLLLEKGVDPNEVDKNGYSAMFYAKK-KSQYIINLLKSY 1470


>85889.m00384|hypothetical protein|1422|Identical to: TigrScan,
            GlimmerHMM gene predictions
          Length = 1422

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 154  SFLLNNTKFIETFEKMRKKKIIVSSIMFLAYNIIYSILCNTNEIHVYQNKNL 205
            +FLLN++   E  ++    +I+ + + F+  +++ SIL       + +N NL
Sbjct: 1264 TFLLNSSHHAELIQQFENSEIVETLLDFIPNDLVVSILKRLEYFEILENLNL 1419


>95305.m00227|hypothetical protein|783|
          Length = 783

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 161 KFIETFEKMRKKKIIVSSIMFLAYNIIYSILCNTNEIHVYQNKNLIYKDYFNEYF 215
           KFI   E  RK  I   +I+    +++   + NT  +  + N +   +DYF  YF
Sbjct: 382 KFIFNLENQRKYAIYALTIITRMLHLLTDDVVNTFPVEEFSNVSWRSQDYFLSYF 546


>92995.m00073|hypothetical protein|1293|Identical to: TigrScan,
           GlimmerHMM gene predictions
          Length = 1293

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = -1

Query: 53  VLLPHIKKNNQISIFLCRSUQSQYIINKIKNYFDILNKGRE---TEIYFENNNYIVDN-- 107
           V L H+K +  +++F+C     + +  K  N FD L        T IYF   N   DN  
Sbjct: 519 VHLQHVKSSISVAVFVCEKIFIEIVDRKAFNTFDELTIELALIFTHIYFGRTN*SKDNCI 340

Query: 108 --DQKYILFL 115
             D++ + FL
Sbjct: 339 TTDKRNLWFL 310


>93878.m00249|conserved hypothetical protein|1188|Identical to:
           GlimmerHMM gene prediction; Covered by: TigrScan gene
           prediction
          Length = 1188

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -1

Query: 166 FEKMRKKKIIVSSIMFLAYNIIYSILCNTNEIHV-YQNKNLIYKDYFNEYFFIQTL 220
           F+ +   KI   SI  +++  IY+I  N    ++ Y+  N+I  +YFN ++FI+ +
Sbjct: 540 FKTIDCTKIGAISI*MISWKTIYAI*VNAIFFYI*YKCFNIIIHNYFNYWYFIEII 373


>88546.m00307|hypothetical protein|1893|Identical to: GlimmerHMM
           gene prediction; Covered by: TigrScan gene prediction
          Length = 1893

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +2

Query: 160 TKFIETFEKMRK--KKIIVSSIMFLAYNIIYSILCNTNEIHVYQNKNLIYKDYFNEYF 215
           +K++ + +KM +    +I+ SI  L Y+++ S   +   +H+  ++ L+Y  YF+ YF
Sbjct: 308 SKWLVSLKKMTRLLSILIILSIYRLEYSLL-SPFSHWRFLHMIISQELVYSQYFSRYF 478


>87719.m00231|hypothetical protein|4254|Identical to: TigrScan,
            GlimmerHMM gene predictions
          Length = 4254

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 63   QISIFLCRSUQSQYIINKIKNYFDILNKGRETEIYFENNNYIVDNDQK 110
            QIS+      Q++ I NK+K Y+   NK RE    F++ N ++ ++QK
Sbjct: 1420 QISVITLYKGQAKNIRNKLKEYWMTKNKERE----FDDYNPLLLSEQK 1551


>86492.m00136|Dynein heavy chain family protein|12027|Identical to:
           TigrScan, GlimmerHMM gene predictions
          Length = 12027

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 167 EKMRKKKIIVSSIMFLAYNIIYSILCNTNEIHVYQ-NKNLIYKDYFNEYFFIQTLRTNL 224
           EKM +   + +SIM +   I+ SIL N ++ H+ + N N++   +     +IQ  + N+
Sbjct: 461 EKMAEDIALFTSIMPMINQILTSILTNLSKFHLQKSNLNILLCQHKESRIYIQMAQQNV 637


>93210.m00007|Glutenin, high molecular weight subunit PW212
           precursor.-related|1266|Identical to: TigrScan,
           GlimmerHMM gene predictions
          Length = 1266

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 187 IYSILCNTNEIHVYQNKNLIYKDYFNEYFFIQTLRTN 223
           +Y   C  N  H+Y + +L++ D+    F+I T+R N
Sbjct: 510 LYISRCWWN*FHIYHSCHLLFFDFLVNSFYIITVRVN 400


>92498.m00042|hypothetical protein|1164|Identical to: TigrScan,
           GlimmerHMM gene predictions
          Length = 1164

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 49  VQKDVLLPHIKKNNQISIFLCRSUQSQYIINKIKNYF 85
           V +D       K N+I++ LCR     +I++ IK YF
Sbjct: 913 VIRDAFAKSKMKRNEINLVLCRGACINHILDYIKEYF 1023


>88864.m00137|hypothetical protein|2805|Identical to: TigrScan,
            GlimmerHMM gene predictions
          Length = 2805

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = -2

Query: 149  EFFIP--SFLLNNTKFIETFEKMRKKKIIVS--SIMFLAYNIIYSILCNTNEIHVYQNKN 204
            +FF+   +FL N   F+E FEK +  ++I S   +   ++ +I SI C  +   ++ N  
Sbjct: 1190 DFFVSKSTFLFNFLSFLEDFEKSKIFELIFSFLDVNSFSFELISSISCVFSCSRLFFNSI 1011

Query: 205  LIYKDYFNEY 214
             +   +F E+
Sbjct: 1010 *LESKFFAEF 981


>88830.m00010|conserved hypothetical protein|7017|Identical to:
            TigrScan, GlimmerHMM gene predictions
          Length = 7017

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 187  IYSILCNTNEIHVYQNKNLIYKDYFNEYFFIQTLRTN 223
            +Y   C  N  H+Y + +L++ D+    F+I T+R N
Sbjct: 4599 LYISRCWWN*FHIYHSCHLLFFDFLFNSFYIITVRVN 4489


>88065.m00021|hypothetical protein|2937|Identical to: TigrScan,
            GlimmerHMM gene predictions
          Length = 2937

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -1

Query: 148  CEFFIPSFLLNNTKFIETFEKMRKKKII-VSSIMFLAYNIIYSILCNTN-EIHVYQNKNL 205
            CE FI   LL +   +  F K R + +I  ++   L    ++S+   ++  I ++ N   
Sbjct: 2583 CEDFIMFILLFSRIIVILFHKFRDRDLIRFNNFFLLVL*KLFSLF*FSHFVIKIFCNLIF 2404

Query: 206  IYKDYFNEYFF 216
            +  D+FN YFF
Sbjct: 2403 LIIDFFNHYFF 2371


>86622.m00281|conserved hypothetical protein|1518|Identical to:
            TigrScan, GlimmerHMM gene predictions
          Length = 1518

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 187  IYSILCNTNEIHVYQNKNLIYKDYFNEYFFIQTLRTN 223
            +Y   C  N  H+Y + +L++ D+    F+I T+R N
Sbjct: 1239 LYISRCWWN*FHIYHSCHLLFFDFLFNSFYIITVRVN 1129


>82032.m00103|hypothetical protein|591|Identical to: TigrScan,
           GlimmerHMM gene predictions
          Length = 591

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 19  SYDFIFLKNEDNIIKGKGSSFLKSSYELLFVQKDVLLPHIKKNNQISIFLCRSUQSQYII 78
           SYD I +  E+N+     + F+  S E +  + DV L  I ++N+++       ++QY I
Sbjct: 76  SYDDILINEEENLSNVDQNFFISESDEFV-SESDVELDIISRSNEVA--RDEEPKNQYFI 246

Query: 79  NKIKNYFD 86
               + FD
Sbjct: 247 ESDSSDFD 270


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:02 AM
  Number of letters in database: 85,114,155
  Number of sequences in database:  99,319
  
Lambda     K      H
   0.326    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,035,190
Number of Sequences: 99319
Number of extensions: 355872
Number of successful extensions: 3763
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3761
length of query: 229
length of database: 28,371,385
effective HSP length: 100
effective length of query: 129
effective length of database: 18,439,485
effective search space: 2378693565
effective search space used: 2378693565
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)