TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel2  protein; PFI1515w Plasmodium falciparum # QUERY
         (229 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

 ***** No hits found ******

  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.326    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,678,682
Number of Sequences: 5578
Number of extensions: 118885
Number of successful extensions: 553
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 220
length of query: 229
length of database: 26,017,032
effective HSP length: 103
effective length of query: 126
effective length of database: 25,442,498
effective search space: 3205754748
effective search space used: 3205754748
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)