TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000019_1.0 # Protein # Selenoprotein O (SelO) # Homo
sapiens # Complete
         (669 letters)

Database: genome.fa 
           306 sequences; 11,192,215 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AACB02000004.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    31   0.96 
gb|AACB02000006.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    29   3.6  
gb|AACB02000003.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    29   4.7  
gb|AACB02000010.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    28   6.2  
gb|AACB02000001.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    28   6.2  
gb|AACB02000019.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    28   8.1  

>gb|AACB02000004.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_4, whole genome shotgun
              sequence
          Length = 343362

 Score = 31.2 bits (69), Expect = 0.96
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
 Frame = +3

Query: 428    LVQVELEEDGALVSKL---LETMHLTGADFTNTFYLLSSFPVELESPGLAEFLARLMEQC 484
              +  + +     L  KL   L T+H    D   TF+ +     E +   + +F+++L    
Sbjct: 299712 ITSIRMSPASRLAEKLKTPLRTLHFPDKDMDCTFHEILLDLPETKKEKVTDFVSKLYSNV 299891

Query: 485    ASLEELRLAFRPQMDPRQLSMM---LMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQ 541
                +E  +L F    D ++L  +    ML +   ++ +  G    +  EL +++QQ  LE 
Sbjct: 299892 CIMESSQLNFSENADNKELEKLRNDYMLQKF--EITSQAGIIEALTTELAQLKQQHGLEF 300065

Query: 542    LSAAELQ 548
                A + Q
Sbjct: 300066 PDAKDSQ 300086


>gb|AACB02000006.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_6, whole genome shotgun
              sequence
          Length = 329365

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 264    DEHTGRAGPSVGRNDIRVQLLDYVISSF 291
              DE T R G  +G+NDI   ++  VIS F
Sbjct: 323733 DERTKRTGKMIGKNDISFLMITLVISLF 323816


>gb|AACB02000003.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_3, whole genome shotgun
              sequence
          Length = 483138

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = -1

Query: 538    RLEQLSAAELQSR------NQGHWADWLQAYRARLDKDLEGAGDAAAWQAEHVRVMHANN 591
              RLE+  A +LQS+       +G   D ++    ++   ++    + A +A+H + +H N+
Sbjct: 458814 RLEESIATKLQSKFADDSCKEGKILDTIKRLELQMS-GIQSEVSSLAVKAQHYKQVHVND 458638

Query: 592    PKYVLRNYIAQNAIEAAERGD 612
              P  +  N     A E A+R +
Sbjct: 458637 PNVLALNAAINLAEERAKRAE 458575


>gb|AACB02000010.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_10, whole genome shotgun
              sequence
          Length = 274062

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 530    LERVEQQSRLEQLSAAELQSRNQGHWADWLQAYRA 564
              L+R E  + L+++    +QS N   W  WL  YRA
Sbjct: 171600 LQRQEYPTWLKEIKIVVIQSINIYFWLTWLSRYRA 171496


>gb|AACB02000001.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_1, whole genome shotgun
              sequence
          Length = 870956

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 274    VGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRN 307
              +GR D RV+LLD   ++ Y E  A HA  +V  N
Sbjct: 478517 IGRRDCRVKLLDLRKAAAYVEPPAVHAQLNVVTN 478618


>gb|AACB02000019.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_19, whole genome shotgun
             sequence
          Length = 201565

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 352   FGFLDRYDPDHVCNASDNTGRYAYSKQPEVCRW 384
             +GF+  ++ D+ C+ S    R  +S+ PE C +
Sbjct: 80590 YGFIRSFERDNPCSGSHLYWRNGFSRYPETCSY 80688


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:05 PM
  Number of letters in database: 11,192,215
  Number of sequences in database:  306
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,151,886
Number of Sequences: 306
Number of extensions: 118056
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 173
length of query: 669
length of database: 3,730,738
effective HSP length: 100
effective length of query: 569
effective length of database: 3,700,138
effective search space: 2105378522
effective search space used: 2105378522
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)