TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000076_1.0 # Protein # Selenoprotein O (SelO) #
Saccharomyces cerevisiae # Complete
         (688 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct...    35   0.067
gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    35   0.067
gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct...    28   6.3  

>gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun
              sequence
          Length = 570487

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = -2

Query: 22     KLTADTSLSSIQEAINVVQQYNATDPVRLKLFHTPRMVSQGAHFAFCLPTKKPHYKPLLL 81
              ++T    + SI E   V+   ++   +RL+  H  R V  G     C+P  K  Y  ++ 
Sbjct: 482763 EITTQYRMGSIFEGNTVIVSDSSNTNIRLRYLHVSRHVGYGNIMHLCIPFLKNSYPKIVR 482584

Query: 82     SQNALDEFNLVQDQDLEKILSGEKVY 107
                   +E     D+ ++ + +G KVY
Sbjct: 482583 VFTYYNEGERSFDEYVQTLRNGVKVY 482506


>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
               shotgun sequence
          Length = 1971884

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 45/231 (19%), Positives = 97/231 (41%), Gaps = 7/231 (3%)
 Frame = -2

Query: 279     ETKIDEQVEKDETEVSTMTGDNISTLSKYDEFFRHVVSLNANTVAHWQAYGFANGVLNTD 338
               ++K+D+ + + E E+ ++  D+++   + D ++    S N N           +   + D
Sbjct: 1392175 KSKLDDGILRAEVEIDSVN-DDLNRPGQSDSYYSDTSSSNFNK----NKATSCDFTESWD 1392011

Query: 339     NTSIMGLTIDYGPFAFLDKFEPSFTPNHDDTAKRYSFANQPSIIWWNLQQFAKDLACLLG 398
               NT++    +D     +      SF  N +      S  N  +    N  +   D      
Sbjct: 1392010 NTAVNQQIVDKS--IYNSDLNKSFENNVEQ-----SLENSTN----NTLETGTDYVMDSV 1391864

Query: 399     PEARDLELLLKGELNSVDDALEKTMIERVQ--KLVELSANEYKYVFTTRYAQIMSQRLGV 456
               P+  DL+  LK +LNSV++ + + +   V+  +L+E   N  K+   TR+   +  +  +
Sbjct: 1391863 PKT-DLKSELKNDLNSVENEIIEELNNNVEIMELMENIENNVKFTTRTRFNYDLDDKFNM 1391687

Query: 457     DLDLEKCMSSTNLKDI-----EHAAEKAKEFCDVIVEPLLDILQATKVDYN 502
               D  L+     +N+ ++     EHA +      D ++    D+ +    D++
Sbjct: 1391686 DHFLQNSSDPSNVDEVFVPNLEHAID------DYLLNTKRDVFEPKPTDFS 1391552



 Score = 27.7 bits (60), Expect = 8.2
 Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = -3

Query: 498    KVDYNNFFIHLQNYKGPFFIKDKSDT-ATLFGAFDEEYLGMFFNSKQLQQMAETEEAFAA 556
              K+ +N+F+ HL+ Y      +D + T + L+       L   FN+  +       EA ++
Sbjct: 541668 KIKFNDFYTHLRKY----IHEDVNGTHSNLY-----TRLNKIFNTPTI-----VLEAKSS 541531

Query: 557    GEKVFDANGELRLLNEKLQEIRNWTQDYLTLV 588
                 V+D + +L+L+ + +  + ++T+ +L  V
Sbjct: 541530 YTSVYDESIDLKLIGDNINYVDSYTKSFLLFV 541435


>gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun
               sequence
          Length = 1835834

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
 Frame = +2

Query: 502     NNFFIHLQNYKGPFFIKDKSDTATLF------GAFDEEYLGMFFNSKQLQQMAETEEAFA 555
               N+ F+  Q Y  PFF K+ +++ATL         FD+E      N    Q M      + 
Sbjct: 1271840 NDVFVAAQ-YSEPFFNKESTNSATLAIWNVYKDIFDKED-AFLSNKYWSQSMESVNSTYH 1272013

Query: 556     AGEKVFDA-NGELRLLNEKLQEIRNWTQDY 584
                G K+     G    L   L    NW++D+
Sbjct: 1272014 LGSKLICIYGGHFGSLGGILSSDVNWSEDH 1272103


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,843,589
Number of Sequences: 9
Number of extensions: 82676
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 156
length of query: 688
length of database: 2,782,535
effective HSP length: 98
effective length of query: 590
effective length of database: 2,781,653
effective search space: 1641175270
effective search space used: 1641175270
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)