TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000076_1.0 # Protein # Selenoprotein O (SelO) # Saccharomyces cerevisiae # Complete (688 letters) Database: genome.fa 5966 sequences; 17,086,925 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAAI01002532.1| Plasmodium berghei whole genome shotgun asse... 35 0.094 emb|CAAI01002761.1| Plasmodium berghei whole genome shotgun asse... 33 0.36 emb|CAAI01002876.1| Plasmodium berghei whole genome shotgun asse... 32 0.61 emb|CAAI01001878.1| Plasmodium berghei whole genome shotgun asse... 32 0.61 emb|CAAI01001235.1| Plasmodium berghei whole genome shotgun asse... 32 0.61 emb|CAAI01002372.1| Plasmodium berghei whole genome shotgun asse... 32 0.79 >emb|CAAI01002532.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP2890, whole genome shotgun sequence Length = 9742 Score = 35.0 bits (79), Expect = 0.094 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -1 Query: 498 KVDYNNFFIHLQNYKGPFFIKD-KSDTATLFGAFDEEYLGMFFNSKQLQQMAETEEAFAA 556 K +Y ++ H + F D + + GAF+ E +G+ F K+L+ ++ + A Sbjct: 2662 KKNYYDYHYHYYTFSSHIFYTDFHFHSNPILGAFEAEDVGVEFLLKELKSVSTSTLATKV 2483 Query: 557 GEKVFDANGELRLLNEKLQEIRNWTQDYL 585 G+K+ L+ L KL EI + D L Sbjct: 2482 GDKL----SSLKTLISKLYEISEYLNDIL 2408 >emb|CAAI01002761.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP3155, whole genome shotgun sequence Length = 2780 Score = 33.1 bits (74), Expect = 0.36 Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 12/262 (4%) Frame = +1 Query: 281 KIDEQVEKDETEVSTMTGDNISTLSKYDEFFRHVVSLNANTVAHWQAYGFANGVLNTDNT 340 KI ++E++ +++ + + LS ++ ++ ++ Q F+ +N Sbjct: 2020 KIKNEIEEESKKLNNLKKNKNKYLSLLKYYYNYIHPISN------QINNFSENKINEIKD 2181 Query: 341 SIMGLTIDYGPFAFLDKFEPSFTPNHDDTAKRYSFANQPSIIWWNLQQFAKDLA------ 394 + L +L+K + T ++Y + I+ NL K++ Sbjct: 2182 DLTNLQESLN--IYLNKI--------NKTNEKYKILQEILNIYPNLINLKKEIVKHGKKL 2331 Query: 395 CLLGPEARDLELLLKGELNSVDDALEKTMIERVQKLVELSANEYKYVFTTRYAQIMSQRL 454 L + +++ K N+ DDAL L +E+ Y + +A++M R+ Sbjct: 2332 FLCKDKIKNVLNFFKDNNNNDDDAL-------------LVKHEF-YNLSDEFAKLMENRI 2469 Query: 455 GVDLDLEKCMSSTNLKDIEHAAEKAKEFCDVIV------EPLLDILQATKVDYNNFFIHL 508 GV ++EK + + K+I K KEF ++ + E I + Y+N Sbjct: 2470 GVGEEMEKSHAKDSSKEIIDLITKLKEFFEIFMRITDKKEDFTYIANIIEKYYDNISCTF 2649 Query: 509 QNYKGPFFIKDKSDTATLFGAF 530 G FI + + T F Sbjct: 2650 SMKNGLLFINNDDNIYTKSNPF 2715 >emb|CAAI01002876.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP3286, whole genome shotgun sequence Length = 1913 Score = 32.3 bits (72), Expect = 0.61 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -3 Query: 439 KYVFTTRYAQIM--SQRLGVDLDLEKCMSSTNLKDIEHAAEKAKEFCD 484 KY F Y +++ + LG + DL C +S ++DIE ++ E+CD Sbjct: 1203 KYEFIYAYIELILNGKNLGENHDLPLCSNSFKIEDIEENKKENMEYCD 1060 >emb|CAAI01001878.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP2148, whole genome shotgun sequence Length = 2645 Score = 32.3 bits (72), Expect = 0.61 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +3 Query: 502 NNFFIHLQNYKGPFFIKDKSDTATLFGAFDEEYLGMFFNSKQ 543 NN+FIH Q FF +++++ T F + E LG F K+ Sbjct: 420 NNYFIHDQEKDNDFFYREQANDNTNFENINSEKLGFFSKHKK 545 >emb|CAAI01001235.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP1413, whole genome shotgun sequence Length = 5002 Score = 32.3 bits (72), Expect = 0.61 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Frame = +3 Query: 402 RDLELLLKGELN---SVDDALEKTMIERVQKLVELSANEYKYVFTTRYAQIMSQR-LGVD 457 +++ELLLKGE+N ++D L + E V+K ++ NE K + T I Q +G D Sbjct: 4191 KNMELLLKGEINCGQAIDIHLNQE-TENVEKNGDIDLNEGKDILLTPEKSIKLQNIIGSD 4367 Query: 458 ----LDLEKCMSSTNLKDIEHAAEKAKEFCD 484 LD + + +++K IE A + + + Sbjct: 4368 IIMALDDVRSATESDIKKIEEATYRTNRWLE 4460 >emb|CAAI01002372.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP2709, whole genome shotgun sequence Length = 8801 Score = 32.0 bits (71), Expect = 0.79 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 8/207 (3%) Frame = -1 Query: 385 NLQQFAKDLACLLGPEARDLELLLKGELNSVDDALEK-TMIERVQKLVELSANEYKYVFT 443 N + F D L E DLE ++ E+N ++AL K +E + K L NE Y Sbjct: 8183 NYENFNNDNQNELLEEKFDLEEKIEKEINKKEEALNKLNNLETILKEKNLEINEKNYKIN 8004 Query: 444 TRYAQIMSQRLGVDLDLEKCMSSTNL-KDIEHAAEK---AKEFCDVIVEPLLDILQATKV 499 T +++++ L + + NL K+ H EK KE ++IV P + + + Sbjct: 8003 T--YKLLNKNL--QKSITNYEHNINLMKENIHKLEKENELKEIKNLIVPPKIIVNISKLS 7836 Query: 500 DYNNFFIHLQNYKGPFFIKDKSDTATLFGAFDEEYLG---MFFNSKQLQQMAETEEAFAA 556 + N F K++ L G +LG + N L++ +T F + Sbjct: 7835 SFENNF--------------KNELKELIGT-SSNFLGNTFKYINENPLKKNLQTNPFFFS 7701 Query: 557 GEKVFDANGELRLLNEKLQEIRNWTQD 583 EK D + ++ + N+K I ++ D Sbjct: 7700 TEKKNDNSTQI-VNNKKDNLISSYIND 7623 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 17,086,925 Number of sequences in database: 5966 Lambda K H 0.319 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,360,723 Number of Sequences: 5966 Number of extensions: 186012 Number of successful extensions: 690 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 380 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 293 Number of HSP's gapped (non-prelim): 452 length of query: 688 length of database: 5,695,641 effective HSP length: 102 effective length of query: 586 effective length of database: 5,087,109 effective search space: 2981045874 effective search space used: 2981045874 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)