TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete
         (499 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000419.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...   242   7e-93
gb|AAXJ01000096.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...   109   4e-37
gb|AAXJ01019173.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    72   8e-33
gb|AAXJ01000406.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    65   3e-25
gb|AAXJ01017801.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    65   4e-10
gb|AAXJ01019255.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    65   4e-10
gb|AAXJ01005136.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    41   0.006
gb|AAXJ01001100.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    39   0.022
gb|AAXJ01001007.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    39   0.022
gb|AAXJ01002519.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    35   0.34 
gb|AAXJ01013791.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    35   0.34 
gb|AAXJ01000014.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    34   0.58 
gb|AAXJ01005488.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    32   2.3  
gb|AAXJ01001026.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    30   9.5  

>gb|AAXJ01000419.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296604260,
            whole genome shotgun sequence
          Length = 30057

 Score =  242 bits (617), Expect(3) = 7e-93,   Method: Composition-based stats.
 Identities = 122/247 (49%), Positives = 167/247 (67%), Gaps = 5/247 (2%)
 Frame = -1

Query: 248  IRQFVPIKVEQIEAGTPGRLRVVAQS---TNSEEIIE-GEYNTVMLAIGRDACTRKIGLE 303
            + + +P K E+ E    G++RV A+S   T S+   E G ++TV++A+GR  C   + L+
Sbjct: 2052 VHEMIPTKFEKTE---DGKVRVYAKSSSDTMSDADSEFGVFDTVLMAVGRTGCAGWLSLD 1882

Query: 304  TVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTV 363
              GV  N   GKIPV   E TN+  IYAIGD++E  +ELTPVAIQ+G++LA RL+ G++ 
Sbjct: 1881 NAGVHYNPDKGKIPVDKFEMTNIDNIYAIGDVVEGMLELTPVAIQSGKMLAARLFGGASR 1702

Query: 364  KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI-PSRDNNKCY 422
              DY NVPTTVFTP+EYG+ G SEE A E++G++ I VYHS+F PL W +   R +  CY
Sbjct: 1701 LMDYHNVPTTVFTPIEYGSVGSSEENAKEEYGDDLI-VYHSFFKPLLWALNKDRGDADCY 1525

Query: 423  AKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
             K++C  K +++VVG H+LGP+AGE+ QG A A+K G TK  LD T+GIHP CAE FTTL
Sbjct: 1524 MKVLCENKGDKKVVGIHILGPDAGEMIQGLAVAMKAGCTKANLDDTVGIHPTCAETFTTL 1345

Query: 483  SVTKRSG 489
            +  K  G
Sbjct: 1344 TQIKEDG 1324



 Score = 88.6 bits (218), Expect(3) = 7e-93,   Method: Composition-based stats.
 Identities = 38/50 (76%), Positives = 44/50 (88%)
 Frame = -2

Query: 199  SYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFI 248
            SY+ALECAGF+AG G D TVMVRSILLRGFDQDMA +IG++ME HG KF+
Sbjct: 2240 SYIALECAGFIAGFGYDTTVMVRSILLRGFDQDMAQRIGKYMELHGTKFV 2091



 Score = 52.8 bits (125), Expect(3) = 7e-93,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
 Frame = -3

Query: 146  KGKEKIYS-----AERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGA 198
            +GK  IY+         LIATG RP   G PG  E CI+SDD+F     PGKTLVVGA
Sbjct: 2455 QGKRFIYTHG*VPLRYILIATGGRPNLGGYPGAGECCITSDDIFRRKAPPGKTLVVGA 2282



 Score = 82.8 bits (203), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
 Frame = -1

Query: 49   LGTRWGLGGTCVNVGCIPKKLMHQAALLGQAL-----------------QDSRNYGWKVE 91
            +GT WGLGGTCVNVGCIPKKL+H +A   +                    DS   GW  E
Sbjct: 2862 IGTTWGLGGTCVNVGCIPKKLLHMSAHTAETAVGPLPLSSTIGGYMCC*GDSAGLGW--E 2689

Query: 92   ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV 125
             T  H+W+ MI+ V  +I SLNWGY+  LR   V
Sbjct: 2688 LTASHNWEAMIQNVTTYISSLNWGYKSELRSTNV 2587


>gb|AAXJ01000096.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296754064,
             whole genome shotgun sequence
          Length = 66714

 Score = 94.7 bits (234), Expect(2) = 4e-37,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 84/178 (47%), Gaps = 44/178 (24%)
 Frame = -1

Query: 39    MVLDFVTPT-PLGTRWGLGGTCVNVGCIPKKLMHQAALL-GQALQ--------------- 81
             ++ DFV+P+   GT+WGLGGTCVNVGCIPKKLMH    L G  L                
Sbjct: 19563 LLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLEGMYLHK*SSDVIVIVRPIT* 19384

Query: 82    --------DSRNYGW----------------KVEETVKHDWDRMIEAVQNHIGSLNWGYR 117
                     D R  GW                  +ET  H  DR  E      GS  W   
Sbjct: 19383 CQATGLY*DPREEGW*SLST*LEHNGFGHTDVYQETQFHV*DRPEERRGQWPGS--WDCC 19210

Query: 118   VALREKKVVYENAYGQF---IGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 172
             + L   +V YENA+G F    GPH +K TN KG+ +  +A+  L+ATG RPR L IPG
Sbjct: 19209 LLLLYVQVEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVLVATGGRPRILDIPG 19036



 Score = 80.5 bits (197), Expect(2) = 4e-37,   Method: Composition-based stats.
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 20/91 (21%)
 Frame = -2

Query: 174   KEYCISSDDLFSLPYCPGKTLVVGASYVALEC-------------------AGFLAGIGL 214
             +EY I+SDDLFSL   PGKTLV+G+ Y+ALEC                   AGFL  +G 
Sbjct: 18980 REYGITSDDLFSLHTPPGKTLVIGSRYIALECKPLITIYL***YWVFSCPGAGFLTELGY 18801

Query: 215   DVTVMVRS-ILLRGFDQDMANKIGEHMEEHG 244
             D TV VRS  +L+ FDQDMANK+   M+E G
Sbjct: 18800 DTTVSVRSDKVLKNFDQDMANKVKSVMQELG 18708



 Score =  109 bits (272), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 91/194 (46%), Gaps = 49/194 (25%)
 Frame = -2

Query: 327   PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLS 386
             P +YA+GD+L+ K ELTPVA++ G LLA RL+ G T   DY  +PTTVFTP EY   G+S
Sbjct: 18380 PCVYAVGDVLKGKPELTPVAVKDGELLADRLFGGKTKLMDYSGIPTTVFTPAEYSHVGMS 18201

Query: 387   EEKAVEKFGE-------ENIEV----------------------------------YHSY 405
             EE+              +N  +                                  YH Y
Sbjct: 18200 EEEVRTNMSSIHP*SMIDNFRL*RSIVKMK*SATCIVGDPSSYL*PIGRRSRLLW*YHPY 18021

Query: 406   FWPLEWTIPSRDNNK--------CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457
                L    PS   N+        C  KI+ +  D E+V+GFH +GP AGEV  GFA A K
Sbjct: 18020 SAYLFSMAPSAQANEFDEEMSPNCMCKIVVHEPD-EKVLGFHYIGPAAGEVIHGFAIAFK 17844

Query: 458   CGLTKKQLDSTIGI 471
              GLTK Q++  I I
Sbjct: 17843 MGLTKAQIEDVIAI 17802


>gb|AAXJ01019173.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296292342, whole genome shotgun sequence
          Length = 1026

 Score = 72.4 bits (176), Expect(3) = 8e-33,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 26/118 (22%)
 Frame = -2

Query: 81  QDSRNYGW------KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREK----------- 123
           +D++  G+      K  +  +HDW+ M+  +Q +I  LN+ YR  LR             
Sbjct: 509 RDAKQLGYTEIPEKKAGDHYQHDWNTMVSDIQMYIKKLNFMYRTGLRNGGVSGLAVGIVV 330

Query: 124 ------KVVYENAYGQF---IGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 172
                 +V YENA+G F    GPH +K TN KG+ +  +A+  L+ATG RPR L IPG
Sbjct: 329 YYCCYVQVEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVLVATGGRPRILDIPG 156



 Score = 59.7 bits (143), Expect(3) = 8e-33,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = -1

Query: 39  MVLDFVTPT-PLGTRWGLGGTCVNVGCIPKKLMHQAALL 76
           ++ DFV+P+   GT+WGLGGTCVNVGCIPKKLMH    L
Sbjct: 696 LLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTL 580



 Score = 49.3 bits (116), Expect(3) = 8e-33,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 174 KEYCISSDDLFSLPYCPGKTLVVGASYVALEC 205
           +E+ I+SDDLFSL   PGKTLV+G+ Y+ALEC
Sbjct: 100 REHGITSDDLFSLHTPPGKTLVIGSRYIALEC 5


>gb|AAXJ01000406.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296547770,
            whole genome shotgun sequence
          Length = 30734

 Score = 64.7 bits (156), Expect(3) = 3e-25,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = -2

Query: 402  YHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457
            Y S F  L + I    PS D  K   K+IC T   E+VVG HV+G  A E+ QGFA A++
Sbjct: 6778 YRSRFVNLYYGIFQVEPS-DKPKTLVKVIC-TGPEEKVVGLHVIGMGADELLQGFAVAMR 6605

Query: 458  CGLTKKQLDSTIGIHPVCAEVFTTLS 483
             G TK  LD T+ IHP   E   TL+
Sbjct: 6604 MGATKADLDRTVAIHPTAGEEIVTLA 6527



 Score = 48.1 bits (113), Expect(3) = 3e-25,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = -1

Query: 361  STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYH 403
            S +  DYE +PT VF     G CGL+E +AVEK+G++N++V +
Sbjct: 6959 SNLYIDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLKVIY 6831



 Score = 42.4 bits (98), Expect(3) = 3e-25,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = -2

Query: 322  EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK 364
            + T++P +YA+GD + +  ELTPVAI AGR L+ RL+    V+
Sbjct: 7159 QNTSMPRVYAVGDAVGN-FELTPVAIAAGRTLSDRLFGPFKVR 7034



 Score = 52.0 bits (123), Expect(2) = 5e-13,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
 Frame = -1

Query: 361  STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV-----------YHSYFW-- 407
            S +  DYE +PT VF     G CGL+E +AVEK+G++N++V           YH + +  
Sbjct: 9512 SNLYIDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLKVIY*TLFSS*LLYHHHHYSD 9333

Query: 408  -------PLEWTIPSR 416
                    L W IPSR
Sbjct: 9332 LSFKVCESLLWYIPSR 9285



 Score = 42.4 bits (98), Expect(2) = 5e-13,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = -2

Query: 322  EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK 364
            + T++P +YA+GD + +  ELTPVAI AGR L+ RL+    V+
Sbjct: 9694 QNTSMPRVYAVGDAVGN-FELTPVAIAAGRTLSDRLFGPFKVR 9569



 Score = 64.7 bits (156), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = -2

Query: 402  YHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457
            Y S F  L + I    PS D  K   K+IC T   E+VVG HV+G  A E+ QGFA A++
Sbjct: 9331 YRSRFVNLYYGIFQVEPS-DKPKTLVKVIC-TGPEEKVVGLHVIGMAADELLQGFAVAMR 9158

Query: 458  CGLTKKQLDSTIGIHPVCAEVFTTLS 483
             G TK  LD T+ IHP   E   TL+
Sbjct: 9157 MGATKADLDRTVAIHPTAGEEIVTLA 9080



 Score = 36.2 bits (82), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 17/55 (30%)
 Frame = -1

Query: 55    LGGTCVNVGCIPKK----------------LMHQAALLGQA-LQDSRNYGWKVEE 92
             +GGTCVNVGC+PKK                L   AA + +  L D+ +YG++ +E
Sbjct: 10856 IGGTCVNVGCVPKKVVVII*LVISPIILP*LTWSAATMNETFLHDACHYGFQTDE 10692



 Score = 33.5 bits (75), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = -2

Query: 55   LGGTCVNVGCIPKKLM 70
            L GTCVNVGC+PKK++
Sbjct: 8326 LAGTCVNVGCVPKKVV 8279


>gb|AAXJ01017801.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296736556, whole genome shotgun sequence
          Length = 1059

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +3

Query: 402 YHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457
           Y S F  L + I    PS D  K   K+IC T   E+VVG HV+G  A E+ QGFA A++
Sbjct: 192 YRSRFVNLYYGIFQVEPS-DKPKTLVKVIC-TGPEEKVVGLHVIGMGADELLQGFAVAMR 365

Query: 458 CGLTKKQLDSTIGIHPVCAEVFTTLS 483
            G TK  LD T+ IHP   E   TL+
Sbjct: 366 MGATKADLDRTVAIHPTAGEEIVTLA 443



 Score = 52.0 bits (123), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
 Frame = +2

Query: 361 STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV-----------YHSYFW-- 407
           S +  DYE +PT VF     G CGL+E +AVEK+G++N++V           YH + +  
Sbjct: 11  SNLYIDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLKVIY*TLFSS*LLYHHHHYSD 190

Query: 408 -------PLEWTIPSR 416
                   L W IPSR
Sbjct: 191 LSFKVCESLLWYIPSR 238


>gb|AAXJ01019255.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296581676, whole genome shotgun sequence
          Length = 1024

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +2

Query: 402 YHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457
           Y S F  L + I    PS D  K   K+IC T   E+VVG HV+G  A E+ QGFA A++
Sbjct: 326 YRSRFVNLYYGIFQVEPS-DKPKTLVKVIC-TGPEEKVVGLHVIGMAADELLQGFAVAMR 499

Query: 458 CGLTKKQLDSTIGIHPVCAEVFTTLS 483
            G TK  LD T+ IHP   E   TL+
Sbjct: 500 MGATKADLDRTVAIHPTAGEEIVTLA 577



 Score = 52.0 bits (123), Expect(2) = 6e-10,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
 Frame = +1

Query: 361 STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV-----------YHSYFW-- 407
           S +  DYE +PT VF     G CGL+E +AVEK+G++N++V           YH + +  
Sbjct: 145 SNLYIDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLKVIYQTLFSS*LLYHHHHYSD 324

Query: 408 -------PLEWTIPSR 416
                   L W IPSR
Sbjct: 325 LSFKVCESLLWYIPSR 372



 Score = 32.0 bits (71), Expect(2) = 6e-10,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 341 ELTPVAIQAGRLLAQRLYAGSTVK 364
           ELTPVAI AGR L+ RL+    V+
Sbjct: 17  ELTPVAIAAGRTLSDRLFGAFKVR 88


>gb|AAXJ01005136.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296580090,
            whole genome shotgun sequence
          Length = 2889

 Score = 40.8 bits (94), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 441  LGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 471
            +GP AGEV  GFA A K GLTK Q++  I I
Sbjct: 2888 IGPAAGEVIHGFAIAFKMGLTKAQIEDVIAI 2796


>gb|AAXJ01001100.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296052137,
            whole genome shotgun sequence
          Length = 14471

 Score = 38.9 bits (89), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
 Frame = +1

Query: 287  VMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEE--------------QTNVPYIYAI 332
            V++A+GR   T  +GL+  GV  + +TG I V DE               +TNVP I+AI
Sbjct: 8758 VLVAVGRRPYTEGLGLDRAGVITDARTGMIEV-DER*DVSGVREVCPGSLRTNVPNIWAI 8934

Query: 333  GDILEDKVELTPVAIQAGRLLAQRLYA 359
            GD++   + L   A   G  +A+R+ A
Sbjct: 8935 GDVVRGPM-LAHKAEDEGFAVAERINA 9012



 Score = 35.0 bits (79), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 52   RWGLGGTCVNVGCIPKK-LMHQA 73
            R  LGGTC+N+GCIP K L+H +
Sbjct: 7712 RSALGGTCLNIGCIPSKCLLHSS 7780


>gb|AAXJ01001007.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296275150,
             whole genome shotgun sequence
          Length = 15716

 Score = 38.9 bits (89), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
 Frame = +1

Query: 287   VMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEE--------------QTNVPYIYAI 332
             V++A+GR   T  +GL+  GV  + +TG I V DE               +TNVP I+AI
Sbjct: 14515 VLVAVGRRPYTEGLGLDRAGVITDARTGMIEV-DER*DVSGVREVCPGSLRTNVPNIWAI 14691

Query: 333   GDILEDKVELTPVAIQAGRLLAQRLYA 359
             GD++   + L   A   G  +A+R+ A
Sbjct: 14692 GDVVRGPM-LAHKAEDEGFAVAERINA 14769



 Score = 35.0 bits (79), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 52    RWGLGGTCVNVGCIPKK-LMHQA 73
             R  LGGTC+N+GCIP K L+H +
Sbjct: 13468 RSALGGTCLNIGCIPSKCLLHSS 13536


>gb|AAXJ01002519.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296756158,
            whole genome shotgun sequence
          Length = 6125

 Score = 35.0 bits (79), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 52   RWGLGGTCVNVGCIPKK-LMHQA 73
            R  LGGTC+N+GCIP K L+H +
Sbjct: 5212 RSALGGTCLNIGCIPSKCLLHSS 5280


>gb|AAXJ01013791.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296209730,
            whole genome shotgun sequence
          Length = 1249

 Score = 35.0 bits (79), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -1

Query: 52   RWGLGGTCVNVGCIPKK-LMHQA 73
            R  LGGTC+N+GCIP K L+H +
Sbjct: 1000 RSALGGTCLNIGCIPSKCLLHSS 932


>gb|AAXJ01000014.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296729952,
             whole genome shotgun sequence
          Length = 112187

 Score = 34.3 bits (77), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
 Frame = -1

Query: 50    GTRWGLGGTCVNV-------------GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKH 96
             G RWGLG  C  V             G +P++  ++   +  AL+D +NY WK E     
Sbjct: 42557 GERWGLGNVCDFVTPDRRPEAGLSSPGSLPREPSYEE--VDDALEDFKNYDWKSE---LK 42393

Query: 97    DWDRMI 102
              WDR +
Sbjct: 42392 SWDRKV 42375


>gb|AAXJ01005488.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296785608,
            whole genome shotgun sequence
          Length = 2714

 Score = 32.3 bits (72), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 375  FTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWT 412
            F PLEY +C +S    V  + EE       Y++PL+++
Sbjct: 1955 FAPLEYFSCRISPRTKVLSYYEEKNSYVEYYYYPLQYS 1842


>gb|AAXJ01001026.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296741282,
            whole genome shotgun sequence
          Length = 15515

 Score = 30.0 bits (66), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 58   TCVNVGCIPKKLMHQAALLGQALQDSRNYGW 88
            TCVN GC  + + H + L+ ++L   RN+ W
Sbjct: 6206 TCVNEGCRMRSV*HPSLLMSESLLVRRNHRW 6114


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.319    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 23491
Number of Hits to DB: 48,727,260
Number of extensions: 716016
Number of successful extensions: 3000
Number of sequences better than 10.0: 14
Number of HSP's gapped: 2989
Number of HSP's successfully gapped: 35
Length of query: 499
Length of database: 28,681,891
Length adjustment: 111
Effective length of query: 388
Effective length of database: 26,074,390
Effective search space: 10116863320
Effective search space used: 10116863320
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)
