TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000024_1.0 # Protein # Selenoprotein S (SelS) # Homo
sapiens # Complete
         (189 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000244.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    35   0.056
gb|AAXJ01000064.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    34   0.13 
gb|AAXJ01000002.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    34   0.13 
gb|AAXJ01001531.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   0.28 
gb|AAXJ01000246.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   0.33 
gb|AAXJ01001445.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    31   1.1  
gb|AAXJ01002794.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    30   2.4  
gb|AAXJ01015090.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   5.3  
gb|AAXJ01004028.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   5.3  
gb|AAXJ01000102.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   5.3  
gb|AAXJ01000009.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   5.3  
gb|AAXJ01003644.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   6.9  
gb|AAXJ01001935.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   6.9  

>gb|AAXJ01000244.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296128100,
            whole genome shotgun sequence
          Length = 41655

 Score = 35.4 bits (80), Expect = 0.056
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +1

Query: 79   QEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
            +E    A LKMQEE  A   K +E+L+++EEE RR+  E     +E  + +  ++K + E
Sbjct: 6205 EEMRIQAALKMQEEEEA-ARKEEERLRKVEEESRRKLEERRKREEEVAAARQRSEKRKLE 6381

Query: 139  DSPGPST 145
               G S+
Sbjct: 6382 SGDGGSS 6402


>gb|AAXJ01000064.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296565242,
             whole genome shotgun sequence
          Length = 75406

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
 Frame = -3

Query: 52    SARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEK------LK 105
             +A   A ++ + + AAAA       K +EA AAA  K QEE +A   K  E+       K
Sbjct: 39122 AAAAAAAKKAEEEEAAAAA---AAKKAEEAAAAAAKKAQEEADAAAAKKAEEAAAAAAAK 38952

Query: 106   QLEEEKRR--QKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSD 154
             + +EEK R  ++ E   +    K+ +G   K   +    P+  +   R+S+
Sbjct: 38951 KAQEEKERIAREEEEAAAAAVAKAAEGKLHKRYNDSIATPAEKAATARESE 38799


>gb|AAXJ01000002.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296571508,
             whole genome shotgun sequence
          Length = 230855

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = -3

Query: 76    VKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKP 135
             VKR +A+    L     L  Q EK   K K   + K + K        +GK  KG+AKK 
Sbjct: 20730 VKRGQAMM---LSGTSPLGGQPEKVLPKAKAKGKAKAKAKETAKKGKDDGKKGKGDAKKA 20560

Query: 136   QEEDSPGPSTSSVLKRKSDRK-PLRGGGY 163
              E+   G  + SVL  + +R+ P  GG Y
Sbjct: 20559 SED---G*RSRSVLISRCERQGPREGGAY 20482


>gb|AAXJ01001531.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296590370,
            whole genome shotgun sequence
          Length = 10268

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 30/86 (34%), Positives = 39/86 (45%)
 Frame = -3

Query: 74   VVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAK 133
            VVV R  A  A  +K +EE      K +E+ K+ EEE RRQ +E    MQE +      K
Sbjct: 6651 VVVLRDRAEEAREVKEEEERR---RKEEEERKRREEEARRQLLE---EMQELR----RRK 6502

Query: 134  KPQEEDSPGPSTSSVLKRKSDRKPLR 159
            K   +           +RKS  KP R
Sbjct: 6501 KQSVDQRSRMGFGGEPERKSGSKPCR 6424


>gb|AAXJ01000246.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296696200,
             whole genome shotgun sequence
          Length = 41458

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 16/73 (21%), Positives = 40/73 (54%)
 Frame = -2

Query: 90    QEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVL 149
             +EE   + E+ +E+ ++ EEE+  ++ E  +  +EG+  +   ++  EE+        V+
Sbjct: 17094 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEVEEEEEGEEEEEEAEEEEVV 16915

Query: 150   KRKSDRKPLRGGG 162
             ++K +++  + GG
Sbjct: 16914 EQKEEQEEEKEGG 16876



 Score = 26.2 bits (56), Expect(2) = 0.33
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -1

Query: 159   RGGGYNPLSGEGGGACSWRPGRRGPSSGGUG 189
             RGGG     G GGG      GR G  SGG G
Sbjct: 17002 RGGGRGRGGGRGGGG----RGRGGRGSGGRG 16922



 Score = 25.0 bits (53), Expect(2) = 0.33
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -2

Query: 96    QVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
             +VEK +E+ ++ EEE+  ++ E  +  +E +  +   ++ +EE+
Sbjct: 17196 EVEKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 17065


>gb|AAXJ01001445.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296681938,
            whole genome shotgun sequence
          Length = 10992

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -1

Query: 74   VVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGK 126
            VVV R  A  A  +K +EE      K +E+ K+ EEE RRQ +E    ++  K
Sbjct: 7473 VVVLRDRAEEAREVKEEEERR---RKEEEERKRREEEARRQLLEEMQELRRRK 7324


>gb|AAXJ01002794.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296741290,
            whole genome shotgun sequence
          Length = 5551

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 141  PGPSTSSVLKRKSDRKPLRGGGYNPLSG 168
            P P+T ++  R  DRKPL GG   PL G
Sbjct: 3415 PKPNTENLTLRHLDRKPLLGGRLCPLRG 3498


>gb|AAXJ01015090.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296248016, whole genome shotgun sequence
          Length = 1167

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 159 RGGGYNPLSGEGGGACSW--RPGRRGPSSGG 187
           R GG     G GGG CS   R GRR  +SGG
Sbjct: 826 RSGGDGGGRGRGGGCCSGSRRSGRRRSTSGG 734


>gb|AAXJ01004028.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296265108,
            whole genome shotgun sequence
          Length = 3788

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 28   SLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQE 80
            S++++ GW   F+ +LL+++   L+A        + D   AA  PDV     E
Sbjct: 1166 SIISSSGWKATFALMLLHLLTLALTATSSLAFDGKSDETTAAPTPDVATTLDE 1324


>gb|AAXJ01000102.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296674772,
             whole genome shotgun sequence
          Length = 65975

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = -1

Query: 35    WYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELN 94
             W+ V+SCI LY + + ++   R +RQR+ D  +          R +  +  RL +     
Sbjct: 43112 WWKVYSCINLYRLTEAIA---RYIRQREPDGKS----------RTKGFSILRLGLHPAFE 42972

Query: 95    AQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKS 127
             A V+  KE    L E  +R K  + +    GKS
Sbjct: 42971 AAVKYRKE----LNETMKRVKPGVTEGD*SGKS 42885


>gb|AAXJ01000009.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296741300,
              whole genome shotgun sequence
          Length = 138884

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 159    RGGGYNPLSGEGGGACSW--RPGRRGPSSGG 187
              R GG     G GGG CS   R GRR  +SGG
Sbjct: 137092 RSGGDGGGRGRGGGCCSGSRRSGRRRSTSGG 137000


>gb|AAXJ01003644.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296554812,
            whole genome shotgun sequence
          Length = 4208

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -2

Query: 75   VVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKK 134
            V K    +   R K +EE   + EK KEK K+    KR++K E     ++GK  K    +
Sbjct: 1390 VAKELTGIRKERGKEREE--RKKEKRKEKRKEKGRGKRKRKKEEEKRKRDGKERKEGIGE 1217

Query: 135  PQEED 139
             +E++
Sbjct: 1216 DREKE 1202


>gb|AAXJ01001935.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296098157,
            whole genome shotgun sequence
          Length = 7982

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 19/69 (27%), Positives = 39/69 (56%)
 Frame = -1

Query: 70   VEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYK 129
            V P+  +K  + L     KM+++   + EK ++K  + ++EK+++K E    M++ K  +
Sbjct: 4646 VLPEDHLK*IQLLKNKNKKMKKKRKKKKEKKEKKETKKKKEKKKKK-EKKKKMKKKKKKE 4470

Query: 130  GNAKKPQEE 138
               KKP+E+
Sbjct: 4469 KKEKKPREK 4443


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.313    0.130    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,669,331
Number of Sequences: 23491
Number of extensions: 222727
Number of successful extensions: 1448
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of query: 189
length of database: 28,681,891
effective HSP length: 100
effective length of query: 89
effective length of database: 26,332,791
effective search space: 2343618399
effective search space used: 2343618399
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000115_1.0 # Protein # Selenoprotein S (SelS) # Mus
musculus # Complete
         (190 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000244.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    36   0.033
gb|AAXJ01001531.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    35   0.075
gb|AAXJ01010142.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   0.28 
gb|AAXJ01001445.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   0.37 
gb|AAXJ01000064.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   0.37 
gb|AAXJ01006411.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    32   0.82 
gb|AAXJ01005178.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    32   0.82 
gb|AAXJ01000246.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    24   3.0  
gb|AAXJ01007835.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   4.1  
gb|AAXJ01006782.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   5.3  
gb|AAXJ01000289.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   5.3  
gb|AAXJ01000004.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   9.1  

>gb|AAXJ01000244.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296128100,
            whole genome shotgun sequence
          Length = 41655

 Score = 36.2 bits (82), Expect = 0.033
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
 Frame = +1

Query: 79   QEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSGRPQEE 138
            +E    A L+MQE+  A   K +E+LR++EEE RR+  E     +E  + ++ S + + E
Sbjct: 6205 EEMRIQAALKMQEEEEA-ARKEEERLRKVEEESRRKLEERRKREEEVAAARQRSEKRKLE 6381

Query: 139  DGPGPST---------SSVIPKGK 153
             G G S+         S V+P  K
Sbjct: 6382 SGDGGSSMKDGRFVSPSPVLPSRK 6453


>gb|AAXJ01001531.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296590370,
            whole genome shotgun sequence
          Length = 10268

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 30/87 (34%), Positives = 42/87 (48%)
 Frame = -3

Query: 74   VVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSG 133
            VVV R  A  A  ++ +E+      K +E+ ++ EEE RRQ +E    MQE R  K+ S 
Sbjct: 6651 VVVLRDRAEEAREVKEEEERR---RKEEEERKRREEEARRQLLE---EMQELRRRKKQSV 6490

Query: 134  RPQEEDGPGPSTSSVIPKGKSDKKPLR 160
              +   G G       P+ KS  KP R
Sbjct: 6489 DQRSRMGFGGE-----PERKSGSKPCR 6424


>gb|AAXJ01010142.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296724126,
            whole genome shotgun sequence
          Length = 1571

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
 Frame = -2

Query: 54   RLRALRQRQLDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRR 113
            R     Q++    +TV+      +R E     R R Q+   A+ +KHK   RQ  +  RR
Sbjct: 1246 RANPSEQKKPQDYKTVMVRQT*ERRAERQKHKRARRQKHKRARRQKHKRARRQKHKRARR 1067

Query: 114  QKIEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSVIP-KGKSDKKPLRGGGYNPLTGEGG 172
            QK       +  R  K    R Q+         SV P +G+   K LR   ++      G
Sbjct: 1066 QK------HKRARRQKHKRARRQKH-----KRRSVQP*QGRRQAKALR*QVHDRTRKLPG 920

Query: 173  GTCSWRPGRRGPSSG 187
             +C ++P  + PS G
Sbjct: 919  QSC-YQPMTQDPSVG 878


>gb|AAXJ01001445.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296681938,
            whole genome shotgun sequence
          Length = 10992

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 29/87 (33%), Positives = 41/87 (47%)
 Frame = -1

Query: 74   VVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSG 133
            VVV R  A  A  ++ +E+      K +E+ ++ EEE RRQ +E    MQE R  K+ S 
Sbjct: 7473 VVVLRDRAEEAREVKEEEERR---RKEEEERKRREEEARRQLLE---EMQELRRRKKQSV 7312

Query: 134  RPQEEDGPGPSTSSVIPKGKSDKKPLR 160
              +   G G       P+ KS   P R
Sbjct: 7311 DQRSRMGFGGE-----PERKSGSTPCR 7246


>gb|AAXJ01000064.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296565242,
             whole genome shotgun sequence
          Length = 75406

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -3

Query: 59    RQRQLDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEK 111
             R+ + ++A+ VL      + +E  AA RLRMQE+  A+ EK K    +  +E+
Sbjct: 39287 RKAKQEEADRVLREQQRQEEEEKEAAQRLRMQEEREAEEEKKKAAAAKKAQEE 39129


>gb|AAXJ01006411.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296738442,
            whole genome shotgun sequence
          Length = 2317

 Score = 31.6 bits (70), Expect = 0.82
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -2

Query: 7    PLSARPALETESLRFLHVTVGSLLASYGWYILFSCILLYIVIQRLSLRLR 56
            P S+ P L + SL FL   + SLL+ + ++ LFS ++ +I+   L L +R
Sbjct: 1035 PFSSLP-LSSSSLLFLSPLLSSLLSPFFFFFLFSPLVFWIIPPTLGLMVR 889


>gb|AAXJ01005178.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296507640, whole genome shotgun sequence
          Length = 2865

 Score = 31.6 bits (70), Expect = 0.82
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 127 SYKRNSGRPQEEDGPGPSTSSVIPKGKSDKKP 158
           S++R+S  P+EE+GPG    SV+   +S   P
Sbjct: 822 SHRRSSHHPKEEEGPGSRKESVVDDEESSSTP 917


>gb|AAXJ01000246.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296696200,
             whole genome shotgun sequence
          Length = 41458

 Score = 23.9 bits (50), Expect(2) = 3.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 96    QVEKHKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSGRPQEED 139
             +VEK +E+  + EEE+  ++ E  +  +E    +      +EE+
Sbjct: 17196 EVEKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 17065



 Score = 23.9 bits (50), Expect(2) = 3.0
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 160   RGGGYNPLTGEGGGTCSWRPGRRGPSSGG 188
             RGGG     G GGG      GR G  SGG
Sbjct: 17002 RGGG----RGRGGGRGGGGRGRGGRGSGG 16928


>gb|AAXJ01007835.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296234424,
            whole genome shotgun sequence
          Length = 1901

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 168  TGEGGGTCSWRPGRRGPSSG 187
            TG+   T SW PG RGPS G
Sbjct: 1252 TGDPTRTSSWAPGGRGPSEG 1193


>gb|AAXJ01006782.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296732330, whole genome shotgun sequence
          Length = 2189

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 54  RLRALRQRQLDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRR 113
           R     Q++    +TV+      +R E     R   Q+   A+ +KHK   RQ  +  RR
Sbjct: 228 RANPSEQKKPQDYKTVMVRQT*ERRAERQEHKRAERQKHKRARRQKHKRARRQKHKRARR 407

Query: 114 QK 115
           QK
Sbjct: 408 QK 413


>gb|AAXJ01000289.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296400278,
            whole genome shotgun sequence
          Length = 37804

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -3

Query: 125  GRSYKRNSGRPQEEDGPGPSTSSVIPK------GKSDKKPLRGGGYNPLTGEGGGTCSWR 178
            G S+ RNSG  +E    GP    ++        G  D+     GG   L GEG   C+WR
Sbjct: 4706 GNSHGRNSGGRREILILGP*KKLLVDY*VQG*IGNRDRTS--DGGKKQLVGEGVWLCTWR 4533

Query: 179  P 179
            P
Sbjct: 4532 P 4530


>gb|AAXJ01000004.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296732374,
              whole genome shotgun sequence
          Length = 191502

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 91     EDLNAQVEKHKEKLRQLEEEKR--RQKIEMWDSMQEGRSYKRNSGR 134
              E+   ++E+   K+ +LE E    R+K+E W+   +G S + + GR
Sbjct: 129040 EEEKQKLEELSRKVERLETENAELRRKVEDWEGRNDGGSSESSRGR 129177


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.314    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,010,877
Number of Sequences: 23491
Number of extensions: 259952
Number of successful extensions: 1561
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of query: 190
length of database: 28,681,891
effective HSP length: 100
effective length of query: 90
effective length of database: 26,332,791
effective search space: 2369951190
effective search space used: 2369951190
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
