TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000478.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    35   0.028
gb|AAXJ01002812.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    30   0.095
gb|AAXJ01005653.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   1.9  
gb|AAXJ01000080.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   1.9  
gb|AAXJ01020605.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   2.9  
gb|AAXJ01021005.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   6.9  
gb|AAXJ01001683.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   8.2  
gb|AAXJ01000595.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   8.7  

>gb|AAXJ01000478.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296293918,
             whole genome shotgun sequence
          Length = 27715

 Score = 34.7 bits (78), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 28    YELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDG 86
             +  + S  K+     WP +   I   +VA+R E + S  +++ C KCG+ LGH F  +G
Sbjct: 22974 FSSYDSSHKFDCGCGWPGYWTNIEG-AVAERSETDGSGRVEIVCAKCGSHLGHVFRGEG 23147


>gb|AAXJ01002812.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296494682,
            whole genome shotgun sequence
          Length = 5498

 Score = 30.4 bits (67), Expect(2) = 0.095,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 43   WPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLND 85
            WP F  +   D++        +   +V CGKCG  LGH F N+
Sbjct: 5259 WPGFYRSAE-DAILSLQSDEDNVRTEVKCGKCGIHLGHVFYNE 5134



 Score = 21.2 bits (43), Expect(2) = 0.095,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 19   GVYVCAKCGYELFSSRSKY 37
            G Y+C +CG  L+ ++ K+
Sbjct: 5431 GKYLCRECGSILYDAKHKF 5375


>gb|AAXJ01005653.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296639668,
            whole genome shotgun sequence
          Length = 2635

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 52   ADSVAKRPEHN---RSEALKVSCGKCGNGLGHEFLND 85
            ADS A R   N     E + +  G+CGN + HEF  D
Sbjct: 1442 ADS*AIRMMMNGPANREIITLQLGRCGNNMAHEFWRD 1332


>gb|AAXJ01000080.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296308546,
             whole genome shotgun sequence
          Length = 69989

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 52    ADSVAKRPEHN---RSEALKVSCGKCGNGLGHEFLND 85
             ADS A R   N     E + +  G+CGN + HEF  D
Sbjct: 20884 ADS*AIRMMMNGPANREIITLQLGRCGNNMAHEFWRD 20774


>gb|AAXJ01020605.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296644178, whole genome shotgun sequence
          Length = 981

 Score = 28.1 bits (61), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 21  YVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN 62
           ++C+KCGY LF++  K   ++ +P     + + S     ++N
Sbjct: 330 FLCSKCGYHLFANSCKRDATALFPRICNLMTSQSTTNSNDYN 205


>gb|AAXJ01021005.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296564306, whole genome shotgun sequence
          Length = 966

 Score = 26.9 bits (58), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 21  YVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN 62
           + C+KCGY LF++  K   ++ +P     + + S     ++N
Sbjct: 909 FSCSKCGYHLFANSCKRDATALFPRICNLMTSQSTTNSNDYN 784


>gb|AAXJ01001683.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296664264,
            whole genome shotgun sequence
          Length = 9230

 Score = 26.6 bits (57), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 21   YVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN 62
            + C+KCGY LF++  K   ++ +P     + + S     ++N
Sbjct: 9020 FSCSKCGYHLFANSCKRDATALFPRICNLMTSQSTTNSNDYN 9145


>gb|AAXJ01000595.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296486030,
             whole genome shotgun sequence
          Length = 24107

 Score = 26.6 bits (57), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 12    FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEH 61
             F   F   VYVCA CG    + R+    +  W           +AKRPEH
Sbjct: 13330 FSGLFFETVYVCALCGTTCTAQRNISWSNVAW-----------LAKRPEH 13214


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.320    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 23491
Number of Hits to DB: 14,800,262
Number of extensions: 243749
Number of successful extensions: 1095
Number of sequences better than 10.0: 20
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 21
Length of query: 116
Length of database: 28,681,891
Length adjustment: 89
Effective length of query: 27
Effective length of database: 26,591,192
Effective search space: 717962184
Effective search space used: 717962184
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)
