TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000184.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   6.0  
gb|AAXJ01006953.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   6.4  

>gb|AAXJ01000184.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296659442,
             whole genome shotgun sequence
          Length = 50223

 Score = 26.9 bits (58), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 20    RERGIQPEHRRTWQFRGTIPQ 40
             RERGI  +H R+W  RG + +
Sbjct: 31920 RERGIHRDHNRSWVRRGEVTE 31982


>gb|AAXJ01006953.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296672464,
            whole genome shotgun sequence
          Length = 2138

 Score = 26.9 bits (58), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 20   RERGIQPEHRRTWQFRGTIPQ 40
            RERGI  +H R+W  RG + +
Sbjct: 1962 RERGIHRDHNRSWVRRGEVTE 1900


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.330    0.143    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 23491
Number of Hits to DB: 6,143,281
Number of extensions: 74227
Number of successful extensions: 761
Number of sequences better than 10.0: 10
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 10
Length of query: 66
Length of database: 28,681,891
Length adjustment: 40
Effective length of query: 26
Effective length of database: 27,742,251
Effective search space: 721298526
Effective search space used: 721298526
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 35 (18.1 bits)
