These options control formatting of alignments in results pages. The default is HTML, but other formats (including plain text) are available. PSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. The Advanced view option allows the database descriptions to be sorted by various indices in a table. more...
Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
Show only sequences from the given organism.
Show only those sequences that match the given Entrez query. more...
Show only sequences with expect values in the given range. more...
Your BLAST job specified more than one input sequence. This box lets you choose which input sequence to show BLAST results for.
An overview of the database sequences aligned to the query sequence is shown. The score of each alignment is indicated by one of five different colors, which divides the range of scores into five groups. Multiple alignments on the same database sequence are connected by a striped line. Mousing over a hit sequence causes the definition and score to be shown in the window at the top, clicking on a hit sequence takes the user to the associated alignments. New: This graphic is an overview of database sequences aligned to the query sequence. Alignments are color-coded by score, within one of five score ranges. Multiple alignments on the same database sequence are connected by a dashed line. Mousing over an alignment shows the alignment definition and score in the box at the top. Clicking an alignment displays the alignment detail.
This dot matrix view shows regions of similarity based upon the BLAST results. The query sequence is represented on the X-axis and the numbers represent the bases/residues of the query. The subject is represented on the Y-axis and again the numbers represent the bases/residues of the subject. Alignments are shown in the plot as lines. Plus strand and protein matches are slanted from the bottom left to the upper right corner, minus strand matches are slanted from the upper left to the lower right. The number of lines shown in the plot is the same as the number of alignments found by BLAST.
Sequences producing significant alignments: (Click headers to sort columns) Accession Description Max score Total score Query coverage E value Max ident Links 8965 gi|126301786|gb|AAXJ01000719.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296719956, whole genome shotgun sequence22902290100%0.096%
>lcl|8965 gi|126301786|gb|AAXJ01000719.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296719956, whole genome shotgun sequence Length=20513 Score = 2290 bits (1240), Expect = 0.0 Identities = 1349/1402 (96%), Gaps = 5/1402 (0%) Strand=Plus/Minus Query 1 TATACTAATAACGCGAGAGGAACTGCGCTCGAGAGCCTCACCTAAAGGTATTGGTGAAGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12895 TATACTAATAACGCGAGAGGAACTGCGCTCGAGAGCCTCACCTAAAGGTATTGGTGAAGT 12836 Query 61 CTGCCGCCGTATTCTCCATAGTGTCCAGAAGGCGTTCAACGAGGTCACCGTCACCTTCGC 120 |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 12835 CTGCAGCCGTATTCTCCATAGTGTCCAGAAGGCGTTCAACGAGGTCGCTGTCACCTTCGC 12776 Query 121 GCTCCTCAACCAAGCCGAGCTTCATCGCCATCAAGCGCTTATACTCTTTCATGAAAACTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12775 GCTCCTCAACCAAGCCGAGCTTCATCGCCATCAAGCGCTTATACTCTTTCATGAAAACTC 12716 Query 181 TCCCATACGTACTCCTTAGTATGTCCGTTGACTGATACATAATGCGATAGGTATGCATAA 240 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 12715 TCCCATACGTACTCCTCAGTATGTCCGTTGACTGATACATAATGCGATAGGTATGCATAA 12656 Query 241 GGTCTAGCTACCAACGAAAGCGAAGCGCACCTTTCCAGGGTCAAGTATGGGCGCCAAGGA 300 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 12655 GGTCTAGCTACCAACGAAAGCGAAGCGCACCTTTTCAGGGTCAAGTATGGGCGCCAAGGC 12596 Query 301 CTCAGCTAGTTTGGTGCAATTCCAGAGGCAAATCTTAGGTTGAGCCTCATAGGTGTAGCG 360 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 12595 CTCAGCTAGTTTGGTGCAATTCCAGAGGCAAATCCTAGGTTGAGCCTCATAGGTGTATCG 12536 Query 361 GCCTCCCCTGACACTTCCGAATGTGATCGACGAGCCAAAGAGCTCTTACGTGTCACTAGT 420 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 12535 GCCTCCCCTGACACTTTTGAATGTGATCGACGAGCCAAAGAGCTCTTACGTGTCACTAGT 12476 Query 421 GTTGCAGATGTAGTCTCTCTGGAAGGCTTCAATGAATCCAAAAGGGCCATAATCAATAGT 480 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 12475 GTTGCAGATGTAGTCTCTCTGGAAGGCTTCAACGAATCCATAAGGGCCATAATCAATAGT 12416 Query 481 ATCCCCCACGATTGACCTGATCAGGCGGACCAAAGTGCCACCGTCAAGCAAGCGGATGAT 540 |||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 12415 ATCCCCCACGATCGACCTGATCGGGCAGACCAAAGTGCCACCATCAAGCAAGCGGATGAT 12356 Query 541 GCGTCTCTGATTTTCTCTGTTATA-TGTATGATAGCGGCATGTATTATGCCTCAATTGAA 599 ||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 12355 GCGCCTCCGATTTTCTCTGTTATCGTGTATGATAGCGGCATGTATCATGCCTCAATTGAA 12296 Query 600 GTACTTGTATCGCTATCATTGGAGTTTCACCCGTTTAACGTGAAGTGGCGTAATACTCTG 659 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 12295 GTACTTGTATCGCTATCATTGGAGTTTCACCCGTTTAACGTGAATTGGTGTAATACTCGG 12236 Query 660 TGAAAAACGCGATAATTGCGGCGCTATGCAGTAGCCGTGAAATAtttttttCACTAGTGT 719 ||||||||||||||||||||| |||||||||||| || ||||||| |||||||||||||| Sbjct 12235 TGAAAAACGCGATAATTGCGGGGCTATGCAGTAGTCGAGAAATATATTTTTCACTAGTGT 12176 Query 720 TTTTCATATCACTAGGGTGAAGCTCCATTGTAACACAGTTCACTTCGTTGCAAGTGACAC 779 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 12175 TTTTCATATCACTAGAGTGAAGCTCCATTGTAACACAGTTGACTTCGTTGCAAGTGACAC 12116 Query 780 TGAGTGGTCAGAAGGGACATCAGAAGCAGCTTACATATTATCGGTATTCAGCACACCATG 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12115 TGAGTGGTCAGAAGGGACATCAGAAGCAGCTTACATATTATCGGTATTCAGCACACCATG 12056 Query 840 ACAAAATCCAACGCATTGCCATTTTGCGACTAACTTCGCGGTCCTCTCGACTACAGCTTG 899 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 12055 ACAAAATCCAACGCATTGCCATTTTGCGACCAACTTCGCGGTCCTCTCGACTACAGCTTG 11996 Query 900 GAAGAATTTCTCGCATCTGGTCTCGAA-A-AAAGTCAAAACGTCGATGAGTGTGATACTC 957 |||||| | ||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 11995 GAAGAACTGCTCGCATCTGGCCTCGAGTAGAAAGTCAAAACGTCGATGAGTGTGATACTC 11936 Query 958 ACTTTTTCTCAACGGATGTCTCCTCTATGTCGGCGCACTCAGCCTCATAGTAGTTGTTGA 1017 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 11935 ACTTTTTCTCAACGGATGTCTCCTCTATGTCGGCGCACTCGGCCTCATAGTAGTTGTTGA 11876 Query 1018 TAACGAAATCCACAAGCTTGTGCAGTAGAGCGGTGTCTCCAGCACTTGGACCCCCACGGC 1077 ||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||| Sbjct 11875 TAACGAAATCCACAAGCTTCTGTAGTAAAGCGGTGTCTCCAGCACTTGGACCACCACGGC 11816 Query 1078 CTATGAACAACGAAATATGATTTCTCTCATGAGAAGAACAATTCCAATCATGGCACCTGT 1137 ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 11815 CTATGAACAGCGAAATATGATTTCTCTCATGAGAAGAACAATTTTAATCACGGCACCTGT 11756 Query 1138 GATGGAGTCAGTCGATTTGAAGATCTCGAATGATCCAAATCTCAGGAAGGTTTCTGCCAG 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11755 GATGGAGTCAGTCGATTTGAAGATCTCGAATGATCCAAATCTCAGGAAGGTTTCTGCCAG 11696 Query 1198 ACGAACAACGACAGCAGTCGGCTCGAGCTTCGCATTGCCATCGTAACTGTAGTGAATCGC 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11695 ACGAACAACGACAGCAGTCGGCTCGAGCTTCGCATTGCCATCGTAACTGTAGTGAATCGC 11636 Query 1258 TACTTGTCA-AGTCTCGGGTTGACCCTACTTGATGTCTCTGATGACTTTGTCTTCAAAAC 1316 | ||||||| | ||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 11635 TTCTTGTCATA-TCTGGGGTCGACCCTACTTGATGTCTCTGATGACTTGGTCTTCAAAAC 11577 Query 1317 TAACACTCACAGCAGCGGCGCGTGTCGTGGGAATGCCAAGGGCATGCATATGTTCACTGC 1376 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 11576 TAACACTCACAGCAGCGGCGCGTGTCGTGGGAATGCCAAGTGCATGCATATGTTCACTGC 11517 Query 1377 AGAGGAACTCTCTGATGGTCGA 1398 |||||||||||||||||||||| Sbjct 11516 AGAGGAACTCTCTGATGGTCGA 11495
BLAST Basic Local Alignment Search Tool
BLAST Basic Local Alignment Search Tool