These options control formatting of alignments in results pages. The default is HTML, but other formats (including plain text) are available. PSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. The Advanced view option allows the database descriptions to be sorted by various indices in a table. more...
Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
Show only sequences from the given organism.
Show only those sequences that match the given Entrez query. more...
Show only sequences with expect values in the given range. more...
Your BLAST job specified more than one input sequence. This box lets you choose which input sequence to show BLAST results for.
An overview of the database sequences aligned to the query sequence is shown. The score of each alignment is indicated by one of five different colors, which divides the range of scores into five groups. Multiple alignments on the same database sequence are connected by a striped line. Mousing over a hit sequence causes the definition and score to be shown in the window at the top, clicking on a hit sequence takes the user to the associated alignments. New: This graphic is an overview of database sequences aligned to the query sequence. Alignments are color-coded by score, within one of five score ranges. Multiple alignments on the same database sequence are connected by a dashed line. Mousing over an alignment shows the alignment definition and score in the box at the top. Clicking an alignment displays the alignment detail.
Score E Sequences producing significant alignments: (Bits) Value ref|NP_076982.3| SECIS binding protein 2 [Homo sapiens] >sp|Q... 1769 0.0 gb|AAH36109.1| SECIS binding protein 2 [Homo sapiens] 1767 0.0 gb|AAK57518.1|AF380995_1 SECIS binding protein 2 [Homo sapiens] 1766 0.0 ref|XP_520120.2| PREDICTED: SECIS binding protein 2 [Pan trog... 1674 0.0 dbj|BAD92177.1| hypothetical protein DKFZp434B216 variant [Ho... 1628 0.0 dbj|BAG61209.1| unnamed protein product [Homo sapiens] 1625 0.0 dbj|BAG64039.1| unnamed protein product [Homo sapiens] 1615 0.0 ref|XP_001090657.1| PREDICTED: similar to SECIS binding prote... 1597 0.0 emb|CAB66815.1| hypothetical protein [Homo sapiens] >emb|CAI9... 1556 0.0 ref|XP_001090539.1| PREDICTED: similar to SECIS binding prote... 1503 0.0 ref|XP_001090428.1| PREDICTED: similar to SECIS binding prote... 1385 0.0 ref|XP_001089731.1| PREDICTED: similar to SECIS binding prote... 1292 0.0 ref|XP_001090316.1| PREDICTED: similar to SECIS binding prote... 1288 0.0 ref|XP_001928402.1| PREDICTED: similar to SECIS-binding prote... 1267 0.0 ref|XP_533552.2| PREDICTED: similar to SECIS-binding protein ... 1249 0.0 ref|XP_588488.4| PREDICTED: similar to SECIS-binding protein ... 1244 0.0 ref|XP_001493870.2| PREDICTED: similar to SECIS-binding prote... 1201 0.0 ref|XP_861480.1| PREDICTED: similar to SECIS-binding protein ... 1200 0.0 ref|NP_076492.1| SECIS binding protein 2 [Rattus norvegicus] ... 1150 0.0 gb|EDL98086.1| SECIS binding protein 2, isoform CRA_a [Rattus... 1150 0.0 ref|NP_083555.1| SECIS binding protein 2 [Mus musculus] >dbj|... 1134 0.0 dbj|BAE40494.1| unnamed protein product [Mus musculus] 1125 0.0 gb|AAH23142.2| SBP2 protein [Homo sapiens] 1041 0.0 ref|XP_861452.1| PREDICTED: similar to SECIS-binding protein ... 972 0.0 dbj|BAB14393.1| unnamed protein product [Homo sapiens] 832 0.0 ref|XP_001375702.1| PREDICTED: similar to SECIS binding prote... 828 0.0 gb|AAH99900.1| SECISBP2 protein [Homo sapiens] 688 0.0 ref|XP_424425.2| PREDICTED: similar to SECIS binding protein ... 526 5e-147 emb|CAI41354.1| SECIS binding protein 2 [Homo sapiens] 509 6e-142 dbj|BAC29914.1| unnamed protein product [Mus musculus] 456 5e-126 emb|CAH10382.1| hypothetical protein [Homo sapiens] 430 3e-118 ref|NP_001090731.1| hypothetical protein LOC100036714 [Xenopu... 419 6e-115 emb|CAG08112.1| unnamed protein product [Tetraodon nigroviridis] 370 3e-100 gb|EDL98087.1| SECIS binding protein 2, isoform CRA_b [Rattus... 350 3e-94 gb|AAI67330.1| Unknown (protein for MGC:135418) [Xenopus trop... 340 3e-91 ref|XP_002196704.1| PREDICTED: similar to KIAA0256 protein [T... 327 3e-87 ref|XP_002214480.1| hypothetical protein BRAFLDRAFT_216514 [B... 327 5e-87 ref|XP_413816.2| PREDICTED: similar to Protein KIAA0256 [Gall... 326 5e-87 ref|XP_001380472.1| PREDICTED: similar to KIAA0256 protein [M... 325 2e-86 ref|XP_002244591.1| hypothetical protein BRAFLDRAFT_249835 [B... 325 2e-86 emb|CAF99852.1| unnamed protein product [Tetraodon nigroviridis] 312 1e-82 sp|Q6A098.2|K0256_MOUSE RecName: Full=Uncharacterized protein... 307 3e-81 gb|EDL28147.1| mCG6131 [Mus musculus] 307 3e-81 ref|NP_808276.2| SECIS binding protein 2-like [Mus musculus] ... 307 3e-81 dbj|BAD32198.1| mKIAA0256 protein [Mus musculus] 307 4e-81 ref|XP_215843.4| PREDICTED: similar to Protein KIAA0256 [Ratt... 306 7e-81 gb|EDL80077.1| similar to mKIAA0256 protein (predicted), isof... 305 9e-81 ref|XP_001113444.1| PREDICTED: similar to Protein KIAA0256 is... 305 1e-80 dbj|BAA13386.3| KIAA0256 protein [Homo sapiens] 305 1e-80 ref|XP_510387.2| PREDICTED: similar to KIAA0256 protein isofo... 305 1e-80 ref|XP_001113528.1| PREDICTED: hypothetical protein LOC9728 i... 305 2e-80 ref|NP_055516.2| SECIS binding protein 2-like [Homo sapiens] ... 305 2e-80 sp|Q93073.3|K0256_HUMAN RecName: Full=Uncharacterized protein... 305 2e-80 ref|XP_001166673.1| PREDICTED: similar to Protein KIAA0256 is... 305 2e-80 ref|XP_861906.1| PREDICTED: similar to Protein KIAA0256 isofo... 305 2e-80 ref|XP_544672.2| PREDICTED: similar to Protein KIAA0256 isofo... 304 2e-80 emb|CAH91943.1| hypothetical protein [Pongo abelii] 304 3e-80 gb|AAH33001.1| SECISBP2L protein [Homo sapiens] 303 5e-80 ref|XP_001499828.2| PREDICTED: similar to Uncharacterized pro... 284 3e-74 gb|AAH71239.1| Secisbp2l protein [Mus musculus] >emb|CAM22355... 282 9e-74 ref|XP_002123233.1| PREDICTED: similar to Uncharacterized pro... 266 9e-69 ref|XP_001233507.1| PREDICTED: similar to KIAA0256 protein [G... 251 2e-64 ref|XP_789274.2| PREDICTED: similar to KIAA0256 protein [Stro... 221 2e-55 ref|XP_001919943.1| PREDICTED: similar to Uncharacterized pro... 213 5e-53 gb|EEC14282.1| hypothetical protein IscW_ISCW021662 [Ixodes s... 173 5e-41 ref|XP_002111297.1| hypothetical protein TRIADDRAFT_24181 [Tr... 169 1e-39 ref|NP_001126259.1| SECIS binding protein 2 [Pongo abelii] >e... 166 1e-38 emb|CAL51930.1| unnamed protein product [Ostreococcus tauri] 134 4e-29 gb|AAH01189.1| SBP2 protein [Homo sapiens] 131 4e-28 ref|XP_002046871.1| GJ12253 [Drosophila virilis] >gb|EDW69213... 129 2e-27 ref|XP_002061796.1| GK17193 [Drosophila willistoni] >gb|EDW72... 127 3e-27 ref|XP_001417625.1| predicted protein [Ostreococcus lucimarin... 127 4e-27 ref|XP_001868539.1| conserved hypothetical protein [Culex qui... 127 5e-27 ref|XP_001122154.1| PREDICTED: similar to SECIS binding prote... 127 6e-27 ref|XP_001983796.1| GH16097 [Drosophila grimshawi] >gb|EDV961... 125 2e-26 ref|XP_002007494.1| GI12361 [Drosophila mojavensis] >gb|EDW17... 125 2e-26 ref|XP_001958348.1| GF10874 [Drosophila ananassae] >gb|EDV411... 116 9e-24 ref|XP_307904.4| AGAP002276-PA [Anopheles gambiae str. PEST] ... 114 4e-23 ref|XP_002093482.1| GE20727 [Drosophila yakuba] >gb|EDW93194.... 109 1e-21 gb|EEB17106.1| conserved hypothetical protein [Pediculus huma... 108 2e-21 ref|XP_001971679.1| GG14299 [Drosophila erecta] >gb|EDV50705.... 108 2e-21 ref|XP_002084094.1| GD14076 [Drosophila simulans] >gb|EDX0967... 108 2e-21 ref|NP_648204.1| SECIS-binding protein 2 [Drosophila melanoga... 108 2e-21 ref|XP_002029697.1| GM25040 [Drosophila sechellia] >gb|EDW406... 108 2e-21 ref|XP_001354192.2| GA20073 [Drosophila pseudoobscura pseudoo... 108 3e-21 ref|XP_002024583.1| GL22547 [Drosophila persimilis] >gb|EDW30... 108 3e-21 gb|EAW66504.1| hCG1654079, isoform CRA_b [Homo sapiens] 105 2e-20 ref|XP_001661740.1| hypothetical protein AaeL_AAEL011576 [Aed... 103 7e-20 ref|XP_001625007.1| predicted protein [Nematostella vectensis... 102 2e-19 ref|XP_002293640.1| predicted protein [Thalassiosira pseudona... 97.8 4e-18 ref|XP_641793.1| hypothetical protein [Dictyostelium discoide... 91.7 3e-16 ref|XP_002176757.1| predicted protein [Phaeodactylum tricornu... 90.5 7e-16 ref|XP_001625008.1| predicted protein [Nematostella vectensis... 87.0 8e-15 ref|XP_792219.2| PREDICTED: similar to KIAA0256 protein, part... 83.2 9e-14 ref|XP_001750284.1| hypothetical protein [Monosiga brevicolli... 77.8 4e-12 ref|XP_668179.1| SECIS binding protein 2 [Cryptosporidium hom... 75.9 2e-11 ref|XP_626885.1| SECIS binding protein. pelota RNA binding do... 75.9 2e-11 ref|XP_002141502.1| ribosomal protein L7Ae domain-containing ... 75.9 2e-11 ref|XP_001011959.2| Ribosomal protein L7Ae containing protein... 74.7 4e-11 ref|XP_001613115.1| hypothetical protein [Plasmodium vivax Sa... 70.1 9e-10