
genewise output
Score 127.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000012_1.0   52 VNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQV        
                     V GN    P+P   ++A+FGMGCFW +E  F  +KGV+STQV        
                     VTGNPMYGPWPVAMEQALFGMGCFWCSEALFVDMKGVFSTQV        
gi|126302393|gb-3780 gagacatgctcggagcgttgagtttttggctggaaggttacg        
                     tcgactagcgctctaacttgtggtggcactttatagttccat        
                     tgctagtttgtcagggcgtagcctgctgtccgcgagcccaaa        


SPP00000012_1.0   94                        -GFAGGYTSNPTYKEVCSEKTGHAEV 
                                             G+A G T NPTY+EVCS +T H+EV 
                                            VGYAQGKTPNPTYEEVCSGQTNHSEV 
gi|126302393|gb-3654 GTGTCCT  Intron 1   TAGggtgcgaacacatgggtagcaactgg 
                     <0-----[3654 : 3603]-0>tgacagaccaccaaatgggacaacat 
                                            aaccgtggtcttcggaccgggttgac 


SPP00000012_1.0  119 VRVVYQPEHMSFEELL----------------KVFWENHDPTQGMRQGN 
                     VR++Y P+ +++++LL                KVFW  HDPT  M QGN 
                     VRIIYNPKTITYKDLLKVTHSSLRSSSMMMYSKVFWSGHDPTVPMAQGN 
gi|126302393|gb-3524 gcaatacaaaatagccagacatcaaaaaaataagttagcgcagcagcga 
                     tgttaacactcaaattatcagctggggtttagattgggaacctctcaga 
                     caaaccggtcgtgcgtggacttggtttgggtcgccgcttcttctgaact 


SPP00000012_1.0  152 DHGT                          YRSAIYPTSAKQMEAALSS 
                     D G+                          YRS IY  + +Q   AL S 
                     DCGS           Q:Q[cag]       YRSGIYYYNEEQKGEALES 
gi|126302393|gb-3377 gtgtCAGTAAGTA  Intron 2   CAGGtaagatttaggcagggcga 
                     aggc  <2-----[3363 : 3320]-2> agggtaaaaaaaagactag 
                     ctcg                          tgttattttggggcgaggc 


SPP00000012_1.0  176                           ENYQKVLSEHGFGP-ITTDIREG 
                                               E YQ  LS+ G+   I T+I    
                                K:K[aaa]       EEYQAALSKAGMKKTIVTEIEPA 
gi|126302393|gb-3261 AAGTGAGCG  Intron 3   CAGAggtcggctaggaaaaagagagcg 
                       <2-----[3259 : 3214]-2> aaaacctcacgtaacttcatacc 
                                               ggcaattcactgggtagcgaggc 


SPP00000012_1.0  199 QTFYYAEDYHQQY                                     
                       FYYAEDYHQQY                                     
                     GEFYYAEDYHQQY                                     
gi|126302393|gb-3143 ggtttgggtccct                                     
                     gataacaaaaaaa                                     
                     ggctttgctcagc                                     


//
Making a Q in phase 2 intron
Making a K in phase 2 intron
>gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780).pep
VTGNPMYGPWPVAMEQALFGMGCFWCSEALFVDMKGVFSTQVVGYAQGKTPNPTYEEVCS
GQTNHSEVVRIIYNPKTITYKDLLKVTHSSLRSSSMMMYSKVFWSGHDPTVPMAQGNDCG
SQYRSGIYYYNEEQKGEALESKEEYQAALSKAGMKKTIVTEIEPAGEFYYAEDYHQQY
//
>gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780).[3780:3103].sp
GTTACGGGCAATCCAATGTATGGTCCTTGGCCTGTCGCAATGGAGCAGGCCTTGTTTGGA
ATGGGCTGCTTTTGGTGCTCTGAGGCTCTCTTCGTGGACATGAAAGGGGTCTTCTCCACA
CAAGTAGTAGGATACGCCCAGGGTAAGACGCCTAACCCTACTTACGAGGAGGTATGCAGC
GGGCAGACGAATCATTCGGAAGTCGTCCGAATAATATACAACCCGAAGACTATCACGTAT
AAGGACCTGCTTAAGGTGACACACAGTTCTCTGAGGAGTAGTAGTATGATGATGTATAGC
AAGGTCTTCTGGAGCGGTCATGACCCTACTGTCCCTATGGCACAAGGCAATGACTGTGGC
TCGCAGTATAGGAGTGGTATATATTATTATAATGAGGAGCAGAAGGGCGAGGCACTGGAG
AGCAAAGAGGAGTACCAAGCAGCTCTTTCCAAAGCCGGTATGAAGAAGACTATAGTGACC
GAGATAGAGCCGGCCGGGGAGTTCTATTATGCTGAGGACTATCACCAACAGTAC
//
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	match	3780	3105	142.69	-	.	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	cds	3780	3655	0.00	-	0	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	intron	3654	3603	0.00	-	.	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	cds	3602	3364	0.00	-	0	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	intron	3363	3320	0.00	-	.	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	cds	3319	3260	0.00	-	1	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	intron	3259	3214	0.00	-	.	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)	GeneWise	cds	3213	3105	0.00	-	1	gi|126302393|gb|AAXJ01000112.1|:subseq(13980,6780)-genewise-prediction-1
//
