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These options control formatting of alignments in results pages. The default is HTML, but other formats (including plain text) are available. PSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. The Advanced view option allows the database descriptions to be sorted by various indices in a table. more...
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An overview of the database sequences aligned to the query sequence is shown. The score of each alignment is indicated by one of five different colors, which divides the range of scores into five groups. Multiple alignments on the same database sequence are connected by a striped line. Mousing over a hit sequence causes the definition and score to be shown in the window at the top, clicking on a hit sequence takes the user to the associated alignments. New: This graphic is an overview of database sequences aligned to the query sequence. Alignments are color-coded by score, within one of five score ranges. Multiple alignments on the same database sequence are connected by a dashed line. Mousing over an alignment shows the alignment definition and score in the box at the top. Clicking an alignment displays the alignment detail.
Score E Sequences producing significant alignments: (Bits) Value ref|YP_062618.1| glutathione peroxidase [Leifsonia xyli subsp... 34.6 1.0 ref|NP_596146.1| glutathione peroxidase Gpx1 [Schizosaccharom... 33.7 1.9 ref|YP_485516.1| glutathione peroxidase [Rhodopseudomonas pal... 33.3 2.5 ref|XP_313167.3| glutathione-dependent peroxidase (AGAP004247... 32.9 3.4 ref|XP_313166.3| glutathione-dependent peroxidase (AGAP004247... 32.9 3.4 ref|XP_001662240.1| glutathione peroxidase [Aedes aegypti] >g... 32.9 3.4 ref|XP_001662239.1| glutathione peroxidase [Aedes aegypti] >g... 32.9 3.4 ref|XP_001662238.1| glutathione peroxidase [Aedes aegypti] >g... 32.9 3.4 ref|ZP_03548551.1| hypothetical protein BLAHAN_02340 [Blautia... 32.5 4.5 ref|YP_001847377.1| Phage-related protein, tail component [Ac... 32.5 4.5 ref|XP_002172470.1| glutathione peroxidase Gpx1 [Schizosaccha... 32.0 6.1 ref|YP_548305.1| dihydroxyacetone kinase, subunit L [Polaromo... 32.0 6.1 ref|ZP_02242718.1| ABC transporter vitamin B12 uptake permeas... 31.6 8.1 ref|YP_001904176.1| hypothetical protein xccb100_2771 [Xantho... 31.2 11 ref|XP_001387817.2| Hydroperoxide resistance conferring gene.... 31.2 11 ref|NP_636873.1| ABC transporter vitamin B12 uptake permease ... 31.2 11 ref|YP_363323.1| glutathione peroxidase [Xanthomonas campestr... 31.2 11 ref|NP_441664.1| glutathione peroxidase [Synechocystis sp. PC... 31.2 11 ref|XP_503454.1| YALI0E02310p [Yarrowia lipolytica] >emb|CAG7... 30.3 20 ref|YP_432273.1| Outer membrane cobalamin receptor protein [H... 29.9 26 ref|YP_516964.1| hypothetical protein DSY0731 [Desulfitobacte... 29.9 26 ref|YP_002457230.1| transcriptional repressor, CopY family [D... 29.9 26 ref|XP_742111.1| glutathione peroxidase [Plasmodium chabaudi ... 29.5 35 ref|YP_533519.1| glutathione peroxidase [Rhodopseudomonas pal... 29.5 35 ref|ZP_03390082.1| vitamin B12 transport periplasmic protein ... 29.1 48 emb|CAG89116.2| DEHA2F09526p [Debaryomyces hansenii] 29.1 48 gb|EDK37429.2| hypothetical protein PGUG_01527 [Pichia guilli... 29.1 48 ref|YP_001709471.1| putative glutathione peroxidase [Clavibac... 29.1 48 ref|YP_001222566.1| putative peroxidase [Clavibacter michigan... 29.1 48 ref|XP_001485856.1| hypothetical protein PGUG_01527 [Pichia g... 29.1 48 ref|XP_460775.1| hypothetical protein DEHA0F10439g [Debaryomy... 29.1 48 ref|XP_001352481.1| GA11336 [Drosophila pseudoobscura pseudoo... 29.1 48 ref|ZP_02030567.1| hypothetical protein PARMER_00539 [Parabac... 28.6 64 dbj|BAF47379.1| hypothetical protein [Macaca fascicularis] 28.6 64 ref|YP_001032278.1| LacI family transcription regulator [Lact... 28.6 64 ref|XP_001836408.1| hypothetical protein CC1G_07055 [Coprinop... 28.6 64 ref|XP_001103956.1| PREDICTED: albumin [Macaca mulatta] >sp|A... 28.6 64 ref|XP_855557.1| PREDICTED: serum albumin [Canis familiaris] 28.6 64 ref|NP_001003026.1| albumin [Canis lupus familiaris] >sp|P498... 28.6 64 sp|Q28522.1|ALBU_MACMU RecName: Full=Serum albumin; Flags: Pr... 28.6 64 emb|CAA76841.1| albumin [Canis familiaris] 28.6 64 pir||I46986 albumin - dog (fragment) >gb|AAB30434.1| albumin ... 28.6 64 ref|YP_002126738.1| glycosyl transferase, group 1 [Alteromona... 28.6 64 ref|YP_809559.1| LacI family transcription regulator [Lactoco... 28.6 64 gb|EEF32352.1| pentatricopeptide repeat-containing protein, p... 28.2 86 ref|ZP_03554471.1| ribosomal protein L17 [Variovorax paradoxu... 28.2 86 ref|XP_001444825.1| hypothetical protein [Paramecium tetraure... 28.2 86 ref|XP_001439430.1| hypothetical protein [Paramecium tetraure... 28.2 86 ref|ZP_01469404.1| Glutamate synthase (NADPH) [Synechococcus ... 28.2 86 ref|ZP_01465505.1| putative outer membrane protein [Stigmatel... 28.2 86 ref|YP_693726.1| thioredoxin family protein, putative [Alcani... 28.2 86 ref|YP_256053.1| hypothetical protein Saci_1431 [Sulfolobus a... 28.2 86 ref|NP_641882.1| ABC transporter vitamin B12 uptake permease ... 28.2 86 ref|NP_907623.1| hypothetical protein WS1465 [Wolinella succi... 28.2 86 ref|NP_948965.1| putative glutathione peroxidase [Rhodopseudo... 28.2 86 ref|ZP_01058430.1| tail tape measure protein, putative [Roseo... 28.2 86 ref|XP_568531.1| glutathione peroxidase [Cryptococcus neoform... 28.2 86 ref|XP_002320692.1| predicted protein [Populus trichocarpa] >... 27.8 115 ref|YP_002561435.1| aldehyde-alcohol dehydrogenase 2 [include... 27.8 115 ref|YP_001866472.1| amino acid adenylation domain-containing ... 27.8 115 ref|YP_001618715.1| putative metal-dependent phosphohydrolase... 27.8 115 ref|ZP_01305790.1| beta alanine-pyruvate transaminase [Oceano... 27.8 115 ref|YP_450973.1| ABC transporter vitamin B12 uptake permease ... 27.8 115 ref|NP_009803.1| Phospholipid hydroperoxide glutathione perox... 27.8 115 ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099] >... 27.8 115 ref|ZP_01170707.1| hypothetical protein B14911_22812 [Bacillu... 27.8 115 ref|ZP_01131244.1| glutathione peroxidase [marine actinobacte... 27.8 115 ref|XP_569982.1| hypothetical protein [Cryptococcus neoforman... 27.8 115 ref|ZP_00515252.1| Glutathione peroxidase [Crocosphaera watso... 27.8 115 ref|XP_001452847.1| hypothetical protein [Paramecium tetraure... 27.4 154 ref|XP_001442363.1| hypothetical protein [Paramecium tetraure... 27.4 154 gb|AAL32975.1| At2g39330/T16B24.3 [Arabidopsis thaliana] >gb|... 27.4 154 ref|NP_181465.1| jacalin lectin family protein [Arabidopsis t... 27.4 154 ref|XP_385607.1| hypothetical protein FG05431.1 [Gibberella z... 27.4 154 ref|ZP_03475038.1| hypothetical protein PRABACTJOHN_00694 [Pa... 26.9 207 ref|XP_002296341.1| acyl-coa dehydrogenase [Thalassiosira pse... 26.9 207 ref|XP_002061021.1| GK10670 [Drosophila willistoni] >gb|EDW72... 26.9 207 ref|XP_001944542.1| PREDICTED: similar to Multidrug-Resistanc... 26.9 207 ref|XP_001847462.1| phospholipid hydroperoxide glutathione pe... 26.9 207 ref|XP_001553477.1| predicted protein [Botryotinia fuckeliana... 26.9 207 ref|XP_001510641.1| PREDICTED: similar to alpha 1 type IX col... 26.9 207 ref|YP_878449.1| glutathione peroxidase [Clostridium novyi NT... 26.9 207 ref|ZP_01252926.1| pseudouridine synthase, Rsu [Psychroflexus... 26.9 207 gb|EED36756.1| glutathione peroxidase [gamma proteobacterium ... 26.5 277 ref|ZP_03539216.1| NAD+ synthetase [Borrelia garinii PBr] >gb... 26.5 277 ref|YP_001772113.1| hypothetical protein M446_5361 [Methyloba... 26.5 277 ref|XP_001846673.1| collagen alpha-2(IV) chain [Culex quinque... 26.5 277 ref|XP_001846137.1| steroid dehydrogenase [Culex quinquefasci... 26.5 277 ref|ZP_02478092.1| 50S ribosomal protein L17 [Haemophilus par... 26.5 277 ref|ZP_02210271.1| hypothetical protein CLOBAR_02679 [Clostri... 26.5 277 ref|XP_001770950.1| predicted protein [Physcomitrella patens ... 26.5 277 ref|YP_001491084.1| hypothetical protein Abu_2200 [Arcobacter... 26.5 277 ref|XP_001525886.1| hypothetical protein LELG_02444 [Lodderom... 26.5 277 ref|YP_001211535.1| redox-sensing transcriptional repressor R... 26.5 277 ref|YP_001330500.1| nucleoside-diphosphate kinase [Methanococ... 26.5 277 ref|ZP_01719526.1| hypothetical protein ALPR1_19788 [Algoriph... 26.5 277 ref|YP_001097902.1| nucleoside-diphosphate kinase [Methanococ... 26.5 277 sp|Q6M0I7.2|NDK_METMP RecName: Full=Nucleoside diphosphate ki... 26.5 277 ref|YP_798449.1| hypothetical protein LBL_2103 [Leptospira bo... 26.5 277 ref|XP_001192117.1| PREDICTED: similar to Hydroxyacyl-Coenzym... 26.5 277