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These options control formatting of alignments in results pages. The default is HTML, but other formats (including plain text) are available. PSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. The Advanced view option allows the database descriptions to be sorted by various indices in a table. more...
Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
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An overview of the database sequences aligned to the query sequence is shown. The score of each alignment is indicated by one of five different colors, which divides the range of scores into five groups. Multiple alignments on the same database sequence are connected by a striped line. Mousing over a hit sequence causes the definition and score to be shown in the window at the top, clicking on a hit sequence takes the user to the associated alignments. New: This graphic is an overview of database sequences aligned to the query sequence. Alignments are color-coded by score, within one of five score ranges. Multiple alignments on the same database sequence are connected by a dashed line. Mousing over an alignment shows the alignment definition and score in the box at the top. Clicking an alignment displays the alignment detail.
Score E Sequences producing significant alignments: (Bits) Value ref|XP_001360108.2| GA20825 [Drosophila pseudoobscura pseudoo... 31.6 8.2 ref|XP_002015452.1| GL11014 [Drosophila persimilis] >gb|EDW31... 31.6 8.2 ref|XP_001612038.1| DEAD/DEAH box domain containing protein [... 31.6 8.2 ref|YP_002575673.1| conserved hypothetical protein (DUF152 do... 31.6 8.2 ref|XP_002159580.1| PREDICTED: similar to predicted protein [... 30.8 15 ref|XP_002163878.1| PREDICTED: similar to predicted protein [... 30.8 15 ref|ZP_03548329.1| hypothetical protein BLAHAN_02118 [Blautia... 30.8 15 gb|ACE62929.1| phospholipid-hydroperoxide glutathione peroxid... 30.8 15 gb|ACF39780.1| glutathione peroxidase [Ctenopharyngodon idella] 30.3 20 ref|ZP_02958302.1| hypothetical protein PROSTU_00005 [Provide... 30.3 20 ref|NP_001007282.2| glutathione peroxidase 1 [Danio rerio] 30.3 20 ref|YP_001876110.1| chromosome segregation and condensation p... 30.3 20 emb|CAA62970.1| selenocysteine [Mus musculus] 29.9 26 ref|YP_281924.1| putative extracellular matrix binding protei... 29.9 26 ref|NP_268962.1| putative extracellular matrix binding protei... 29.9 26 ref|XP_002059565.1| GJ14840 [Drosophila virilis] >gb|EDW62987... 29.5 36 ref|XP_001744426.1| hypothetical protein [Monosiga brevicolli... 29.5 36 gb|ABY16788.1| S-locus F-box protein [Prunus dulcis] 29.5 36 ref|XP_001320612.1| hypothetical protein [Trichomonas vaginal... 29.5 36 gb|ABM05600.1| S-locus F-box protein [Prunus dulcis] 29.5 36 gb|ABL86030.1| S-locus F-box protein [Prunus tenella] 29.5 36 ref|XP_419417.2| PREDICTED: similar to Usher syndrome 2A [Gal... 29.5 36 gb|ABH03468.1| S haplotype-specific F-box protein 1 [Prunus c... 29.5 36 gb|ABG72797.1| SFB protein [Prunus spinosa] 29.5 36 gb|AAX19993.1| S-locus F-box protein [Prunus avium] 29.5 36 sp|Q2MI42.1|YCF1_SOLLC RecName: Full=Putative membrane protei... 29.5 36 ref|YP_514911.1| ycf1 protein [Solanum lycopersicum] >emb|CAJ... 29.5 36 dbj|BAD08683.1| S haplotype-specific F-box protein 1 [Prunus ... 29.5 36 sp|A8GA09.2|SYA_SERP5 RecName: Full=Alanyl-tRNA synthetase; A... 29.1 48 gb|EDY83070.1| Phosphofructokinase domain protein [Verrucomic... 29.1 48 emb|CAR57996.1| unnamed protein product [Candida glabrata] 29.1 48 emb|CAR57994.1| unnamed protein product [Candida glabrata] 29.1 48 gb|EDV08738.1| extracellular matrix protein 30 [Saccharomyces... 29.1 48 ref|ZP_02171144.1| outer membrane protein-like protein [Bacil... 29.1 48 ref|YP_001488828.1| response regulator [Bacillus pumilus SAFR... 29.1 48 ref|YP_001375444.1| DNA mismatch repair protein MutS domain-c... 29.1 48 gb|EDN59333.1| conserved protein [Saccharomyces cerevisiae YJ... 29.1 48 ref|XP_001612785.1| Protein kinase domain containing protein ... 29.1 48 ref|YP_001477077.1| alanyl-tRNA synthetase [Serratia proteama... 29.1 48 ref|YP_588660.1| alanyl-tRNA synthetase [Baumannia cicadellin... 29.1 48 ref|XP_444827.1| hypothetical protein CAGL0A01386g [Candida g... 29.1 48 ref|YP_051456.1| alanyl-tRNA synthetase [Pectobacterium atros... 29.1 48 ref|NP_013540.1| Non-essential protein of unknown function; E... 29.1 48 ref|XP_002236148.1| hypothetical protein BRAFLDRAFT_235602 [B... 28.6 64 emb|CAG86117.2| DEHA2C08558p [Debaryomyces hansenii] 28.6 64 ref|XP_001992134.1| GH24597 [Drosophila grimshawi] >gb|EDV918... 28.6 64 ref|XP_001949941.1| PREDICTED: similar to dynein, axonemal, h... 28.6 64 ref|XP_001812261.1| PREDICTED: similar to candidate odorant r... 28.6 64 ref|YP_001470314.1| gid protein [Thermotoga lettingae TMO] >s... 28.6 64 ref|ZP_01866454.1| putative regulator protein [Vibrio shiloni... 28.6 64 pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine T... 28.6 64 ref|ZP_01202041.1| conserved hypothetical protein [Flavobacte... 28.6 64 ref|XP_458050.1| hypothetical protein DEHA0C09438g [Debaryomy... 28.6 64 ref|XP_001670581.1| Hypothetical protein CBG05707 [Caenorhabd... 28.6 64 gb|EEF85595.1| hypothetical protein METSMIF1_00813 [Methanobr... 28.2 86 ref|XP_002322495.1| predicted protein [Populus trichocarpa] >... 28.2 86 ref|XP_001922002.1| PREDICTED: similar to flavin-containing m... 28.2 86 ref|ZP_02962099.1| hypothetical protein PROSTU_04194 [Provide... 28.2 86 ref|XP_001385847.2| Golgi alpha-1,2- mannosyltransferase [Pic... 28.2 86 ref|XP_001377243.1| PREDICTED: similar to hCG1982192, [Monode... 28.2 86 ref|XP_001377266.1| PREDICTED: similar to hCG1982192, [Monode... 28.2 86 ref|YP_758598.1| p94 [Plutella xylostella multiple nucleopoly... 28.2 86 ref|YP_001407925.1| transcription regulator [Campylobacter cu... 28.2 86 ref|YP_001466426.1| protein YieJ [Campylobacter concisus 1382... 28.2 86 ref|NP_703121.1| unknown [Rachiplusia ou multiple nucleopolyh... 28.2 86 ref|YP_524191.1| imidazole glycerol phosphate synthase, gluta... 28.2 86 gb|AAA46702.1| early 94 kd protein 28.2 86 ref|YP_075989.1| branched-chain alpha-keto acid dehydrogenase... 28.2 86 ref|NP_054164.1| 94K [Autographa californica nucleopolyhedrov... 28.2 86 ref|NP_050681.1| ribosomal protein L27 [Guillardia theta] >sp... 28.2 86 ref|ZP_01062537.1| two-component system sensor histidine kina... 28.2 86 ref|XP_002139493.1| EF hand family protein [Cryptosporidium m... 27.8 115 ref|YP_002150148.1| alanyl-tRNA synthetase [Proteus mirabilis... 27.8 115 ref|YP_001705825.1| putative polysaccharide biosynthesis prot... 27.8 115 ref|XP_001894289.1| hypothetical protein [Brugia malayi] >gb|... 27.8 115 ref|ZP_02001418.1| hypothetical protein BGP_3597 [Beggiatoa s... 27.8 115 ref|YP_001018908.1| hypothetical protein P9303_29131 [Prochlo... 27.8 115 ref|XP_001583443.1| hypothetical protein [Trichomonas vaginal... 27.8 115 ref|XP_001320324.1| hypothetical protein [Trichomonas vaginal... 27.8 115 ref|XP_001320322.1| hypothetical protein [Trichomonas vaginal... 27.8 115 ref|XP_458267.1| hypothetical protein DEHA0C14564g [Debaryomy... 27.8 115 ref|XP_001348326.1| hypothetical protein [Plasmodium falcipar... 27.8 115 ref|XP_001020159.1| hypothetical protein [Tetrahymena thermop... 27.8 115 ref|YP_384351.1| shikimate dehydrogenase [Geobacter metallire... 27.8 115 ref|YP_454218.1| alanyl-tRNA synthetase [Sodalis glossinidius... 27.8 115 ref|YP_340587.1| hypothetical protein PSHAa2088 [Pseudoaltero... 27.8 115 ref|NP_931178.1| DNA primase [Photorhabdus luminescens subsp.... 27.8 115 ref|NP_326127.1| hypothetical protein MYPU_2960 [Mycoplasma p... 27.8 115 ref|NP_786059.1| glycosyltransferase (putative) [Lactobacillu... 27.8 115 gb|EEF85036.1| hypothetical protein METSMIF1_01653 [Methanobr... 27.4 155 emb|CAX42950.1| protein kinase C, putative [Candida dublinien... 27.4 155 ref|YP_002607133.1| MutS-related protein [Nautilia profundico... 27.4 155 ref|ZP_03606985.1| hypothetical protein METSMIALI_00081 [Meth... 27.4 155 ref|YP_002501541.1| hypothetical protein Mnod_6460 [Methyloba... 27.4 155 gb|EEB10494.1| conserved hypothetical protein [Pediculus huma... 27.4 155 ref|YP_002153235.1| bifunctional acetyl-/propionyl-coenzyme A... 27.4 155 ref|XP_001951140.1| PREDICTED: hypothetical protein [Acyrthos... 27.4 155 ref|ZP_02903129.1| vitamin B12 transport periplasmic protein ... 27.4 155 ref|YP_001785497.1| RecD/TraA family helicase [Clostridium bo... 27.4 155 ref|ZP_02616886.1| helicase, RecD/TraA family [Clostridium bo... 27.4 155