TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|87332028|gb|DQ278902.1| Leishmania infantum putative
selenoprotein 1-like (Sel1) gene, complete sequence
         (167 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000059.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    31   0.83 
gb|AAXJ01000250.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    31   1.1  
gb|AAXJ01011803.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   5.4  
gb|AAXJ01002416.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   5.4  
gb|AAXJ01000841.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   5.4  
gb|AAXJ01000582.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   5.4  
gb|AAXJ01005515.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   9.1  
gb|AAXJ01003851.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    25   9.7  

>gb|AAXJ01000059.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296145542,
             whole genome shotgun sequence
          Length = 76272

 Score = 31.2 bits (69), Expect = 0.83
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
 Frame = -1

Query: 7     TGTCSDIAVDATESSAAT------HHKQAD-SQTKKRVS---VFYDFADYGPVRELAHRP 56
             +G C  I+  AT +S AT      H KQ +   T +RV+   V +D    G V+ L   P
Sbjct: 47121 SGLC--ISFIATNASTATANAIPDHTKQGEVGNTCRRVAFLPVLWDQFLAGEVKYLTRGP 46948

Query: 57    LLRACRKKI 65
              +RACRKK+
Sbjct: 46947 RMRACRKKL 46921


>gb|AAXJ01000250.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296669568,
             whole genome shotgun sequence
          Length = 41084

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
 Frame = -2

Query: 7     TGTCSDIAVDATESSAAT------HHKQAD-SQTKKRVS---VFYDFADYGPVRELAHRP 56
             +G C  I+  AT +S AT      H KQ +   T +RV+   V +D    G V+ L   P
Sbjct: 14473 SGLC--ISFIATNASTATANAIPDHTKQGEVGNTCRRVAFLPVVWDQFLAGEVKYLTRGP 14300

Query: 57    LLRACRKKI 65
              +RACRKK+
Sbjct: 14299 RMRACRKKL 14273


>gb|AAXJ01011803.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296547764, whole genome shotgun sequence
          Length = 1402

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 76  CSSIASPSTSPRCVVFLQLNRCSSAYSHRITUKMELDELVECMVKI 121
           C+S    +   RCV+   L+RC SA  H++      D++ EC  +I
Sbjct: 389 CASACVRTHKQRCVLTYTLSRCPSA--HQLVSMGCADDVKECSTRI 520


>gb|AAXJ01002416.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296624316, whole genome shotgun sequence
          Length = 6352

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 77  SSIASPSTSPRCVVFLQLNRCSSAYS 102
           SS+  PSTSP C+V   L+R +S  S
Sbjct: 939 SSVQMPSTSPNCLVHATLSRFNSTTS 1016


>gb|AAXJ01000841.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296338660,
            whole genome shotgun sequence
          Length = 18119

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 76   CSSIASPSTSPRCVVFLQLNRCSSAYSHRITUKMELDELVECMVKI 121
            C+S    +   RCV+   L+RC SA  H++      D++ EC  +I
Sbjct: 4478 CASACVRTHKQRCVLTYTLSRCPSA--HQLVSMGCADDVKECSTRI 4347


>gb|AAXJ01000582.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296781004,
             whole genome shotgun sequence
          Length = 24545

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 67    TLTLIAGAGCSSIASPSTSPRCVVFLQLNRC 97
             T T  A A  SS ASPST+P  +VF  L  C
Sbjct: 21120 TTTTAAAAVTSSEASPSTAPSLLVFFLLLWC 21212


>gb|AAXJ01005515.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296104137,
            whole genome shotgun sequence
          Length = 2696

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 6    HTGTCSDIAVDATESSAATHHKQAD 30
            HT TC D      E+    HHKQ+D
Sbjct: 1677 HTNTCRDYKKAHAENRTRDHHKQSD 1751


>gb|AAXJ01003851.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296585970,
            whole genome shotgun sequence
          Length = 3963

 Score = 25.4 bits (54), Expect(2) = 9.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 55   RPLLRACRKKIFT-LTLIAGAGCSSIASPSTSPRCVVFLQLNRCSSA 100
            +PL  A   +IFT +  +AGA  SSI +P  S    +++  N   SA
Sbjct: 3494 QPLPSALTMRIFTFIANLAGASASSIFNPQVSYSSNLYIM*NPVLSA 3354



 Score = 20.4 bits (41), Expect(2) = 9.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 131  DPCPRSRREUAFC 143
            DP P SRR   +C
Sbjct: 3331 DPIPSSRRSCFYC 3293


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.323    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,228,689
Number of Sequences: 23491
Number of extensions: 359832
Number of successful extensions: 2442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of query: 167
length of database: 28,681,891
effective HSP length: 98
effective length of query: 69
effective length of database: 26,379,773
effective search space: 1820204337
effective search space used: 1820204337
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
