T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:1 sec.
SCORE=77
*
BAD AVG GOOD
*
gi|145680675|gb : 73
SPP00000015_1.0 : 78
SPP00000088_1.0 : 80
gi|5174415|ref| : 73
gi|28574275|ref : 79
cons : 77
gi|145680675|gb ---------------------------------------------
SPP00000015_1.0 M-------AGYE---------------------------------
SPP00000088_1.0 M-------GCMR---------------------------------
gi|5174415|ref| M-------SGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQL
gi|28574275|ref MRQLFRRLMNHQ---------------------------------
cons
gi|145680675|gb ---FISKEGLQSLHNYSFKGEDHSFCANHILAPFIWEPLLKNVIP
SPP00000015_1.0 ---YVSPEQLAGFDKYKYSAVDTNPLSLYVMHPF-WNTIVK-VFP
SPP00000088_1.0 ---YLSEAHLRGFERYKYSSIDTSFLSVYVMHPF-WNYCVK-FVP
gi|5174415|ref| PTPPLSRHQLKRLEEHRYQSAGRSLLE-PLMQGY-WEWLVR-RVP
gi|28574275|ref ---YLTQDQINGFDNYKYSAIDTSPLSQYVMHPF-WDWLVK-FFP
cons :: : :..: :.. . . :: : *: :: .*
gi|145680675|gb RWLAPNILTTVGFISMTFAWIVLAIAT--------PTGTEPIHPI
SPP00000015_1.0 TWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS--APGHKHVPDW
SPP00000088_1.0 KWLAPNVLTFVGFLMTVVNFILIAYYDWGFEAANSETGN-TVPAW
gi|5174415|ref| SWIAPNLITIIGLSINICTTILLVFYC--------PTATEQAPLW
gi|28574275|ref RWFAPNLMTFLGFLFSAMNLVLLSYYDWNFDASSGEEGTTPIPSW
cons *:***::* *: ::: .
gi|145680675|gb VYLLTIICIFIYQIADNIDGRQARRTKNATPLGELFDHGNDSLMI
SPP00000015_1.0 VWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSC
SPP00000088_1.0 VWTVAAINILIYYNLDGMDGKQARRTGTSGPLGELFDHGLDSYSA
gi|5174415|ref| AYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLST
gi|28574275|ref VWLCTAINIFLAYTLDGIDGKQARRIGLSGPLGELFDHGLDSYTA
cons .: :: * :**:**** : ********* **
gi|145680675|gb GIFAL--VVVLALRT---T---TILTLSVLLMLYLIFFLSHWEEY
SPP00000015_1.0 VYFVV--TVYSIFGRG-STGVSVFVLYLLLWVVLFSFILSHWEKY
SPP00000088_1.0 ALIPI--YLFSLFGT---HDLPPIRMFFVIWNVFLNFYLTHVEKY
gi|5174415|ref| VFVVLGTCIAVQLGT------NPDWMFFCCFAGTFMFYCAHWQTY
gi|28574275|ref MLIPT--CLYSIFGRSRVYSVRPMRMYYVCLTVYFNFFISHWEKY
cons . : : : * :* : *
gi|145680675|gb HTGVLILGPLLNPTELQLMVIGMLLGETVYS-DII-SISI----F
SPP00000015_1.0 NTGILFLPWGYDISQVTIS--FVYIVTAVVGVEAWYEPFL----F
SPP00000088_1.0 NTGVMFLPWGYDFTMWGVS--GMLFVATVFGPEMY-RFSI----Y
gi|5174415|ref| VSGTLRFGI-IDVTEVQIFIIIMHLLAVIGGPPFW-QSMIPVL--
gi|28574275|ref NTGILYLPWGYDLSMWGST--AMYLVTWWMGFERW-KFELPLGSY
cons :* : : : : : : . :
gi|145680675|gb G-FQINTTIAYCVI-FGAFGALAMYSYNVYAFIK-E-TKKCSFKD
SPP00000015_1.0 N-FLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYE
SPP00000088_1.0 G-FTMANMFEFVLIGSGMVSSHPIIARNIYLSYKNKTGKMRPMWE
gi|5174415|ref| N-IQM-KIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTIAGTS
gi|28574275|ref GTLPLGNVMEAVLHVSA-MANLPLVIINVYNSYAHRTGRLLSFWE
cons . : : . . .: . . .
gi|145680675|gb SLKRLFPFMQFFIL-------------------------------
SPP00000015_1.0 AMVPLFSPCLLFILSTAWILW--SPSDILELHPRVFYFMVGTAFA
SPP00000088_1.0 MLRPFFAFVWLFVITVVWSFF--SRNDVINKEPRILWILYGTIFS
gi|5174415|ref| VLSPFLHIG--SVITLAAMIYKKSAVQLFEKHPCLYILTFGFVSA
gi|28574275|ref AVRPMWPFITYFVILLAWPYV--SPNDIMEKDPRAIFMLSGTIFS
cons : : ::
gi|145680675|gb ---------------------------------------------
SPP00000015_1.0 NSTCQLIVCQMSSTRCPTLNWLLVPLFLVV------LV---VNLG
SPP00000088_1.0 NIACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSD
gi|5174415|ref| KITNKLVVAHMTKSEMHLHDTAFIGP-ALL------FL----DQY
gi|28574275|ref NVSCRLIVSQMSVTRCEAWHWQ-TPMFILS------FL----TSL
cons
gi|145680675|gb ---------------------------------------------
SPP00000015_1.0 VASYVES-ILLYTLTTAFTLAHIHYGVRVVKQLSSHFQIYPFSLR
SPP00000088_1.0 LTSDTER-WILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVR
gi|5174415|ref| FNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIK
gi|28574275|ref WIPLLER-PLLYLLLIVTTLSHWQYGASVVNQMCEHFNRVCFTVH
cons
gi|145680675|gb -----------------------------------T
SPP00000015_1.0 KPNSDULGM--------------------EEKNIGL
SPP00000088_1.0 KSSSQ-SGSDIT---------QLLQNNNKIKPLKSH
gi|5174415|ref| VSTAH---------------------------SNHH
gi|28574275|ref KRVPQ-EELPKKKTLLAEEISQADKPQAEEPLKKDI
cons