T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:4 sec.
SCORE=98
*
 BAD AVG GOOD
*
TR1Homo           :  97
TR2Homo           :  97
TR3Homo           :  97
TR1Acanthamoeba   :  98
TR2Acanthamoeba   :  98
TR3Acanthamoeba   :  98
cons              :  98

TR1Homo           MNG------------------------------------------
TR2Homo           MAAM-----------------------------------------
TR3Homo           MGHVHRLVSGKRRMHLTSRPVASTHSPLILDMCPHLNNGPMTGCG
TR1Acanthamoeba   ---------------------------------------------
TR2Acanthamoeba   ---------------------------------------------
TR3Acanthamoeba   ---------------------------------------------

cons                                                           


TR1Homo           ---------------------------------------------
TR2Homo           ------AVALRGLGGRFRWRTQAVAGGVRGAARG-----------
TR3Homo           RAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPA
TR1Acanthamoeba   ---------------------------------------------
TR2Acanthamoeba   ---------------------------------------------
TR3Acanthamoeba   ---------------------------------------------

cons                                                           


TR1Homo           ---------------------------------------------
TR2Homo           ---------------------------------------------
TR3Homo           PQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGH
TR1Acanthamoeba   ---------------------------------------------
TR2Acanthamoeba   ---------------------------------------------
TR3Acanthamoeba   ---------------------------------------------

cons                                                           


TR1Homo           ---------------------------------------------
TR2Homo           ---------------------------------------------
TR3Homo           VRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVV
TR1Acanthamoeba   ---------------------------------------------
TR2Acanthamoeba   ---------------------------------------------
TR3Acanthamoeba   ---------------------------------------------

cons                                                           


TR1Homo           ---------------------------------------------
TR2Homo           ---------------------------------------------
TR3Homo           IFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEI
TR1Acanthamoeba   ---------------------------------------------
TR2Acanthamoeba   ---------------------------------------------
TR3Acanthamoeba   ---------------------------------------------

cons                                                           


TR1Homo           -----------------------------------PEDLPKSYDY
TR2Homo           -----------------------------------AAA--GQRDY
TR3Homo           TNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQED--LAYDY
TR1Acanthamoeba   -----------------------------------PED--HTYDY
TR2Acanthamoeba   -------------------------------------------DY
TR3Acanthamoeba   ------------------------------------ED--HTYDY

cons                                                         **


TR1Homo           DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGT
TR2Homo           DLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGT
TR3Homo           DLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGT
TR1Acanthamoeba   DLIVIGGGSGGLAAAKEAGRLGKKVALLDFVVPTPTGTTWGLGGT
TR2Acanthamoeba   DLIVIGGGSGGLAAAKEAGRLGKKVALLDFVVPTPTGTTWGLGGT
TR3Acanthamoeba   DLIVIGGGSGGLAAAKEAGRLGKKVALLDFVVPTPTGTTWGLGGT

cons              **:::*******:.****.  *:** ::*:* *:* ** ******


TR1Homo           CVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE
TR2Homo           CVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAE
TR3Homo           CVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTK
TR1Acanthamoeba   CVNVGCIPKKLMHQAALLGESLKDAQHYGWAVPDNVNHDWEKMVN
TR2Acanthamoeba   CVNVGCIPKKLMHQAALLGESLKDAQHYGWAVPDNVNHDWEKMVN
TR3Acanthamoeba   CVNVGCIPKKLMHQAALLGESLKDAQHYGWAVPDNVNHDWEKMVN

cons              *******************  : *: ::**   : * *:*  * :


TR1Homo           AVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK
TR2Homo           AVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGK
TR3Homo           AIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQ
TR1Acanthamoeba   AVQDHIGSLNWGYRVALREKNVNYLNAYGVFVDSHTLECTDRAKK
TR2Acanthamoeba   AVQDHIGSLNWGYRVALREKNVNYLNAYGVFVDSHTLECTDRAKK
TR3Acanthamoeba   AVQDHIGSLNWGYRVALREKNVNYLNAYGVFVDSHTLECTDRAKK

cons              *:*:*: *****:*: *::: * * *  . *:  * :  . .  :


TR1Homo           EKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGK
TR2Homo           EILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGK
TR3Homo           ETYYTAAQFVIATGERPRYL-GIQGDKEYCITSDDLFSLPYCPGK
TR1Acanthamoeba   VTRVTARRFLVATGGRPKYP-DIPGDREFGITSDDFFSLPTPPGK
TR2Acanthamoeba   VTRVTARRFLVATGGRPKYP-DIPGDREFGITSDDFFSLPTPPGK
TR3Acanthamoeba   VTRVTARRFLVATGGRPKYP-DIPGDREFGITSDDFFSLPTPPGK

cons                  :* ::::*** **:*   * *  *: *:***:* *   ***


TR1Homo           TLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG
TR2Homo           TLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVI
TR3Homo           TLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVG
TR1Acanthamoeba   TLVVGASYVALECAGFVRGLGYDTTVMVRSILLRGFDQQLANMIG
TR2Acanthamoeba   TLVVGASYVALECAGFVRGLGYDTTVMVRSILLRGFDQQLANMIG
TR3Acanthamoeba   TLVVGASYVALECAGFVRGLGYDTTVMVRSILLRGFDQQLANMIG

cons              ****************: *:* *.*:*:*** ******:::. : 


TR1Homo           EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQST-NSEEIIE
TR2Homo           EHMASHGTRFLRGCAPSRVRRLPD---GQLQVTWEDSTTGKEDT-
TR3Homo           SYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKST-EGTETIE
TR1Acanthamoeba   QYMECHGIKFVRSAVPTKVEKLES---GKLRVTFQQD--GVEGVE
TR2Acanthamoeba   QYMECHGIKFVRSAVPTKVEKLES---GKLRVTFQQD--GVEGVE
TR3Acanthamoeba   QYMECHGIKFVRSAVPTKVEKLES---GKLRVTFQQD--GVEG--

cons              .:*  ** :*:*   *  *.::     *:*:*  :.   . *   


TR1Homo           GEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV
TR2Homo           GTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSV
TR3Homo           GVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNV
TR1Acanthamoeba   -EYDTVMWAIGREAETKKIGLDKAGVQVD-RIGKIH-TVMERTNV
TR2Acanthamoeba   -EYDTVMWAIGREAETKKIGLDKAGVQVD-RIGKIH-TVMERTNV
TR3Acanthamoeba   -VYDTVMWAIGREAETKKIGLDKAGVQVD-RIGKIH-TVMERTNV

cons                ::**: **** . *:.:.*:. **. .    **     * *.*


TR1Homo           PYIYAIGDILED-----KVELTPVAIQAGRLLAQRLYAGSTVKCD
TR2Homo           PHIYAIGDVVEG-----RPELTPIAIMAGRLLVQRLFGGSSDLMD
TR3Homo           PYVYAVGDILED-----KPELTPVAIQSGKLLAQRLFGASLEKCD
TR1Acanthamoeba   PHIYAIGDIID-EPSQRSLELTPVAIKAGILLVRRLYAGSTQPMD
TR2Acanthamoeba   PHIYAIGDIID-EPSQRSLELTPVAIKAGILLVRRLYAGSTQPMD
TR3Acanthamoeba   PHIYAIGDIIVDEPSQRSLELTPVAIKAGILLVRRLYAGSTQPMD

cons              *::**:**::         ****:** :* **.:**:..*    *


TR1Homo           YENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEW
TR2Homo           YDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEF
TR3Homo           YINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEW
TR1Acanthamoeba   YINVPTTVFTPIEYGAIGYSEEDAIAQFGEDNLEIYHSYFKPLEW
TR2Acanthamoeba   YINVPTTVFTPIEYGAIGYSEEDAIAQFGEDNLEIYHSYFKPLEW
TR3Acanthamoeba   YINVPTTVFTPIEYGAIGYSEEDAIAQFGEDNLEIYHSYFKPLEW

cons              * *********:***. * ***.*:  . ::::*:**: : ***:


TR1Homo           TIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAAL
TR2Homo           TVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGI
TR3Homo           TVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAM
TR1Acanthamoeba   TIAERDDNVCYAKLICDKRDSERVVGFHVLGPNAGEITQGFGTAM
TR2Acanthamoeba   TIAERDDNVCYAKLICDKRDSERVVGFHVLGPNAGEITQGFGTAM
TR3Acanthamoeba   TIAERDDNVCYAKLICDKRDSERVVGFHVLGPNAGEITQGFGTAM

cons              *:. *: . **.*::*     : *:*:*.*******:****. .:


TR1Homo           KCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCUG
TR2Homo           KCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
TR3Homo           KCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCUG
TR1Acanthamoeba   KAGATKSTFDATVGIHPTTAEEFTTLEVTKRSGVEAQKKGC--
TR2Acanthamoeba   KAGATKSTFDATVGIHPTTAEEFTTLEVTKRSGVEAQKKGC--
TR3Acanthamoeba   KAGATKSTFDATVGIHPTTAEEFTTLEVTKRSGVEAQKKGC--

cons              *.* :   .  *:****. .* ...* ::* ** .    **