T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:2 sec.
SCORE=97
*
 BAD AVG GOOD
*
TR1Homo          :  98
TR2Homo          :  97
TR3Homo          :  97
TRAcanthamoeba   :  97
cons             :  97

TR1Homo          MNG------------------------------------------
TR2Homo          MAAMA----------------------------------------
TR3Homo          MGHVHRLVSGKRRMHLTSRPVASTHSPLILDMCPHLNNGPMTGCG
TRAcanthamoeba   ---------------------------------------------

cons                                                          


TR1Homo          ---------------------------------------------
TR2Homo          -------VALRGLGGRFRWRTQAVAGGVRGAARG-----------
TR3Homo          RAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPA
TRAcanthamoeba   ---------------------------------------------

cons                                                          


TR1Homo          ---------------------------------------------
TR2Homo          ---------------------------------------------
TR3Homo          PQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGH
TRAcanthamoeba   ---------------------------------------------

cons                                                          


TR1Homo          ---------------------------------------------
TR2Homo          ---------------------------------------------
TR3Homo          VRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVV
TRAcanthamoeba   ---------------------------------------------

cons                                                          


TR1Homo          ---------------------------------------------
TR2Homo          ---------------------------------------------
TR3Homo          IFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEI
TRAcanthamoeba   ---------------------------------------------

cons                                                          


TR1Homo          -----------------------------------PEDLPKSYDY
TR2Homo          -----------------------------------AAA--GQRDY
TR3Homo          TNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQED--LAYDY
TRAcanthamoeba   -----------------------------------PED--HTYDY

cons                                                        **


TR1Homo          DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGT
TR2Homo          DLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGT
TR3Homo          DLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGT
TRAcanthamoeba   DLIVIGGGSGGLAAAKEAGRLGKKVALLDFVVPTPTGTTWGLGGT

cons             **:::*******:.****.  *:** ::*:* *:* ** ******


TR1Homo          CVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE
TR2Homo          CVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAE
TR3Homo          CVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTK
TRAcanthamoeba   CVNVGCIPKKLMHQAALLGESLKDAQHYGWAVPDNVNHDWEKMVN

cons             *******************  : *: ::**   : * *:*  * :


TR1Homo          AVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK
TR2Homo          AVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGK
TR3Homo          AIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQ
TRAcanthamoeba   AVQDHIGSLNWGYRVALREKNVNYLNAYGVFVDSHTLECTDRAKK

cons             *:*:*: *****:*: *::: * * *  . *:  * :  . .  :


TR1Homo          EKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGK
TR2Homo          EILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGK
TR3Homo          ETYYTAAQFVIATGERPRYL-GIQGDKEYCITSDDLFSLPYCPGK
TRAcanthamoeba   VTRVTARRFLVATGGRPKYP-DIPGDREFGITSDDFFSLPTPPGK

cons                 :* ::::*** **:*   * *  *: *:***:* *   ***


TR1Homo          TLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG
TR2Homo          TLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVI
TR3Homo          TLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVG
TRAcanthamoeba   TLVVGASYVALECAGFVRGLGYDTTVMVRSILLRGFDQQLANMIG

cons             ****************: *:* *.*:*:*** ******:::. : 


TR1Homo          EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQST-NSEEIIE
TR2Homo          EHMASHGTRFLRGCAPSRVRRLPD---GQLQVTWEDSTTGKED-T
TR3Homo          SYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKST-EGTETIE
TRAcanthamoeba   QYMECHGIKFVRSAVPTKVEKLES---GKLRVTFQQD--GVEGV-

cons             .:*  ** :*:*   *  *.::     *:*:*  :.   . *   


TR1Homo          GEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV
TR2Homo          GTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSV
TR3Homo          GVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNV
TRAcanthamoeba   EEYDTVMWAIGREAETKKIGLDKAGVQVD-RIGKIH-TVMERTNV

cons               ::**: **** . *:.:.*:. **. .    **     * *.*


TR1Homo          PYIYAIGDILED----KVELTPVAIQAGRLLAQRLYAGSTVKCDY
TR2Homo          PHIYAIGDVVEG----RPELTPIAIMAGRLLVQRLFGGSSDLMDY
TR3Homo          PYVYAVGDILED----KPELTPVAIQSGKLLAQRLFGASLEKCDY
TRAcanthamoeba   PHIYAIGDIIDEPSQRSLELTPVAIKAGILLVRRLYAGSTQPMDY

cons             *::**:**:::       ****:** :* **.:**:..*    **


TR1Homo          ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWT
TR2Homo          DNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFT
TR3Homo          INVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWT
TRAcanthamoeba   INVPTTVFTPIEYGAIGYSEEDAIAQFGEDNLEIYHSYFKPLEWT

cons              *********:***. * ***.*:  . ::::*:**: : ***:*


TR1Homo          IPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK
TR2Homo          VAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIK
TR3Homo          VAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMK
TRAcanthamoeba   IAERDDNVCYAKLICDKRDSERVVGFHVLGPNAGEITQGFGTAMK

cons             :. *: . **.*::*     : *:*:*.*******:****. .:*


TR1Homo          CGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCUG
TR2Homo          CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
TR3Homo          CGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCUG
TRAcanthamoeba   AGATKSTFDATVGIHPTTAEEFTTLEVTKRSGVEAQKKGCCG

cons             .* :   .  *:****. .* ...* ::* ** .    ** *