T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:3 sec.
SCORE=47
*
BAD AVG GOOD
*
Contig15518_Con : 47
Human : 51
Rat : 49
Horse : 51
Cow : 51
Chicken : 45
T.thermophila : 37
T.thermophila_1 : 40
Dog : 52
Mouse : 53
C.briggsae : 48
Orangutan : 51
C.elegans : 46
M.mulatta : 46
X.laevis : 48
Human_1 : 50
Rat_1 : 50
Mouse_1 : 48
Cow_1 : 48
M.fascicularis : 49
Pig : 44
E.granulosus : 35
N.vectensis : 44
cons : 47
Contig15518_Con ---UAUUCU-CU--CCCUCGGC----UGUU-UGCAAAUGACGGC-
Human ----AUUUGGCAGGGCAUCGAA-GG-GAUG-CAUCCAUGAAGUC-
Rat UGACAUUCGGCAGAGCAUCA----C-GGUG-CGUCCAUGAAGUC-
Horse ---CACUCGGCAGUGCAUCGAA-GG-GAUG-CGUCCAUGAAGUC-
Cow ---CUCUUGGCAGAGCAUCAGA-GC-GAUG-CGUCCAUGAAGUC-
Chicken --AGACAGUGCAG-GCUUCA-G-GC-UGUG-AUUUCAUGAAAGC-
T.thermophila ---AAAUAA-UA-CCUUCAACUGGU-AGG-AAUAUAAUGAUUAG-
T.thermophila_1 ---AAAACAAAG-UUAAUUUA-UCU-AAUAUGGAAAAUGACGAA-
Dog --ACAUUCGGCA-UGCAUCGGC-GU-GGUG-CGUCCAUGAAGUC-
Mouse ---CAUCUGGCAGAGCAUCACA-GG-CAUG-CGUCCAUGAAGUC-
C.briggsae ---CGUUUGGUG-AUCGCCAGUAAG-GGCA-GCUUUGUGACGAC-
Orangutan ---CAUUUGGCAGGGCAUCGAA-GG-GAUG-CAUCCAUGAAGUC-
C.elegans ---GUGGUCGC---UA-GUAG---A-GGCA-GCUUUGUGACGAC-
M.mulatta ---CAG--GG-----CAUCAAA-GG-GAUG-CAUCCAUGAAGUC-
X.laevis ---UUGAGAAUGACACAUAAGG-GG-UAUC-AGCUAAUGAAGGC-
Human_1 ---CACCCCCCCCCAGGCUCCU-GG-UGCC-AGAUGAUGACGAC-
Rat_1 ---CAGCCUU-CACACACUGCC-AG-UGUC-AGAUGAUGACGGC-
Mouse_1 --GCCAGCCU-CUGACACUCCC-AG-CGUC-AGAUGAUGAUGGC-
Cow_1 ---GGCACCA-CGCACCCCGGACCC-UGCC-AGAUGAUGAGGAC-
M.fascicularis --GCACUCC-UUCUAGGCUCCU-GC-UGCC-AGAUGAUGACGAC-
Pig ---ACCCCCG-CACCUCCAGGCUCCAUGCC-AG-AAAUGAAGAC-
E.granulosus ---CUGCGAGGA-GGCAUAGGACGA-AAC-CGUACUAUGACUCG-
N.vectensis ---ACCACCCCUGCAAAUCUAU-GC-AGUU-UAUAUAUGAUGGUC
cons ***
Contig15518_Con GCCAGCGUA-AAGCUCA-CCACGAGC-CCGC-UU---GCGUCUGA
Human ACCAGUCUC-AAGCCCA-UGUGGUAG-GCGG-U------GAUGGA
Rat ACUAGCCUC-AAGCCCA-AGUGGUGG-GCAG-U------GACAGA
Horse ACUGGCCUCAAAGCCCA-UGUGGUGG-GCGG-U------GAUGGA
Cow ACCAGCCCC-AAGCCCCUCGUGGUGG-GUGG-U------GAUGGA
Chicken AUGUGU-G-AAAUGCCCU-GC--UAA-ACAU-C------AGCUGG
T.thermophila AGAACUCC-UAACCU--CA-CUGAGG-AGGGUUUUCUAUGAGGCA
T.thermophila_1 UUUAGUCU-AAACUG--UA-AAACAG-GGAUU-A---AAUUCUGA
Dog ACUGGCCUC-AAGCC-A-UGCGGUGG-GCAG-U------GAUGGA
Mouse ACUGGCCUC-AAGCCCA-AGUGGUGG-GCAG-U------GACAGA
C.briggsae UCUGGGCU-AAACUC--CA-UCGUGA-GCGCCUU---UGGUCUGA
Orangutan ACCAGUCUC-AAGCCCA-UGUGGUAG-GCGG-U------GAUGGA
C.elegans CUUUGGCU-AAACUC--CA-UCGUGA-GCGCCUC---UGGUCUGA
M.mulatta ACCAGUCUC-AAGCCCA-UGGGGUAG-GCGG-U------GAUGGA
X.laevis UUGUGU-AUA-AACCCACC-CUGUGG-GCUGGGC---AGGUCUGA
Human_1 CUGGGU-GGA-AACCUACC-CUGUGG-GCAC-CC---AUGUCCGA
Rat_1 CUGUGC-AGA-AACCC-CC-ACGUGG-GCUG-CC---AGGUUUGA
Mouse_1 CUGGGC-AGA-AACCC--C-AUGUGG-GCCGCCC---AGGUUUGA
Cow_1 CUGUGC-GGA-AACCC--C-CCGCGG-GCUGCCC---AUGUCUGA
M.fascicularis CUGGGU-GGA-AACCCACC-CUGUGG-GCAC-CC---AUGUCCGA
Pig CUGCGC-AGA-AACCC--U-CCGCGG-GCUGCCC---ACGUCUGA
E.granulosus AGACCCGU-CAACCGAGCU-UUGCGG---AGCGGAUCUUGACG-A
N.vectensis AAGUUG-GCA-AACCCUUUAAAGUGGAGCAGCUU---A-ACCGGA
cons *
Contig15518_Con C-----UGUCGAACACCACAGCAAUAAAGGC
Human AC-AACUGUCAA--AUCAGUU---UU-AGCA
Rat A--AGCUGUCGA---UC--UGUUGGGUUCAA
Horse AC-AGCUGUCGA--AGC-------AG-UUUU
Cow AC----CGUCAA--AGCAGUUUUCUCUUGGC
Chicken A----CUGUCAA-UAUGCCCAUUG--CAUUG
T.thermophila AG-AU---UAU-U--G-AUU-UUGU-UGUAG
T.thermophila_1 AA-AA---UAU-A--U-GAC-AA-U-UUAGA
Dog GC-AACUGUCGA---GC-------AGUUUUA
Mouse AG-AGCUGCCGG--GUC--UGUUGAG-CUCA
C.briggsae UG-CG---CUC-U--G-AAA-AC-G-GUCAC
Orangutan -C-AACUGUCAA-GAUGAGUUUUAGC-AUGA
C.elegans UG-CG---CCU-C--C-AAA-AC-G-UCCAC
M.mulatta AC-AACUGUCAA--AUCAGUUUUAGCAUGAC
X.laevis GC-AUC--UCUGA-UUCUCUGUUACGUGUAA
Human_1 GC-CC---CCUGG--CAUUU-CUGCA-AUGC
Rat_1 AC-CC----CUGG--CAUUU-CUGGAGUGCU
Mouse_1 AC-CC----CUGG--CAUUU-CUAGAGCACU
Cow_1 GC-CC----CUGG--CAUCA-CC-CG-GCGC
M.fascicularis GC-CC---CCUGG--CAUUU-CUGCA-GUGC
Pig GG-AC---CCUGG--CAU---UU-CC-AGAG
E.granulosus UG-UA---GGU-C--G-UCUCGUGU-GCUCC
N.vectensis UGAAGG--CGUGU-A--CUUGGUUCCUCGCA
cons