T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:3 sec.
SCORE=47
*
 BAD AVG GOOD
*
Contig15518_Con   :  47
Human             :  51
Rat               :  49
Horse             :  51
Cow               :  51
Chicken           :  45
T.thermophila     :  37
T.thermophila_1   :  40
Dog               :  52
Mouse             :  53
C.briggsae        :  48
Orangutan         :  51
C.elegans         :  46
M.mulatta         :  46
X.laevis          :  48
Human_1           :  50
Rat_1             :  50
Mouse_1           :  48
Cow_1             :  48
M.fascicularis    :  49
Pig               :  44
E.granulosus      :  35
N.vectensis       :  44
cons              :  47

Contig15518_Con   ---UAUUCU-CU--CCCUCGGC----UGUU-UGCAAAUGACGGC-
Human             ----AUUUGGCAGGGCAUCGAA-GG-GAUG-CAUCCAUGAAGUC-
Rat               UGACAUUCGGCAGAGCAUCA----C-GGUG-CGUCCAUGAAGUC-
Horse             ---CACUCGGCAGUGCAUCGAA-GG-GAUG-CGUCCAUGAAGUC-
Cow               ---CUCUUGGCAGAGCAUCAGA-GC-GAUG-CGUCCAUGAAGUC-
Chicken           --AGACAGUGCAG-GCUUCA-G-GC-UGUG-AUUUCAUGAAAGC-
T.thermophila     ---AAAUAA-UA-CCUUCAACUGGU-AGG-AAUAUAAUGAUUAG-
T.thermophila_1   ---AAAACAAAG-UUAAUUUA-UCU-AAUAUGGAAAAUGACGAA-
Dog               --ACAUUCGGCA-UGCAUCGGC-GU-GGUG-CGUCCAUGAAGUC-
Mouse             ---CAUCUGGCAGAGCAUCACA-GG-CAUG-CGUCCAUGAAGUC-
C.briggsae        ---CGUUUGGUG-AUCGCCAGUAAG-GGCA-GCUUUGUGACGAC-
Orangutan         ---CAUUUGGCAGGGCAUCGAA-GG-GAUG-CAUCCAUGAAGUC-
C.elegans         ---GUGGUCGC---UA-GUAG---A-GGCA-GCUUUGUGACGAC-
M.mulatta         ---CAG--GG-----CAUCAAA-GG-GAUG-CAUCCAUGAAGUC-
X.laevis          ---UUGAGAAUGACACAUAAGG-GG-UAUC-AGCUAAUGAAGGC-
Human_1           ---CACCCCCCCCCAGGCUCCU-GG-UGCC-AGAUGAUGACGAC-
Rat_1             ---CAGCCUU-CACACACUGCC-AG-UGUC-AGAUGAUGACGGC-
Mouse_1           --GCCAGCCU-CUGACACUCCC-AG-CGUC-AGAUGAUGAUGGC-
Cow_1             ---GGCACCA-CGCACCCCGGACCC-UGCC-AGAUGAUGAGGAC-
M.fascicularis    --GCACUCC-UUCUAGGCUCCU-GC-UGCC-AGAUGAUGACGAC-
Pig               ---ACCCCCG-CACCUCCAGGCUCCAUGCC-AG-AAAUGAAGAC-
E.granulosus      ---CUGCGAGGA-GGCAUAGGACGA-AAC-CGUACUAUGACUCG-
N.vectensis       ---ACCACCCCUGCAAAUCUAU-GC-AGUU-UAUAUAUGAUGGUC

cons                                                   ***     


Contig15518_Con   GCCAGCGUA-AAGCUCA-CCACGAGC-CCGC-UU---GCGUCUGA
Human             ACCAGUCUC-AAGCCCA-UGUGGUAG-GCGG-U------GAUGGA
Rat               ACUAGCCUC-AAGCCCA-AGUGGUGG-GCAG-U------GACAGA
Horse             ACUGGCCUCAAAGCCCA-UGUGGUGG-GCGG-U------GAUGGA
Cow               ACCAGCCCC-AAGCCCCUCGUGGUGG-GUGG-U------GAUGGA
Chicken           AUGUGU-G-AAAUGCCCU-GC--UAA-ACAU-C------AGCUGG
T.thermophila     AGAACUCC-UAACCU--CA-CUGAGG-AGGGUUUUCUAUGAGGCA
T.thermophila_1   UUUAGUCU-AAACUG--UA-AAACAG-GGAUU-A---AAUUCUGA
Dog               ACUGGCCUC-AAGCC-A-UGCGGUGG-GCAG-U------GAUGGA
Mouse             ACUGGCCUC-AAGCCCA-AGUGGUGG-GCAG-U------GACAGA
C.briggsae        UCUGGGCU-AAACUC--CA-UCGUGA-GCGCCUU---UGGUCUGA
Orangutan         ACCAGUCUC-AAGCCCA-UGUGGUAG-GCGG-U------GAUGGA
C.elegans         CUUUGGCU-AAACUC--CA-UCGUGA-GCGCCUC---UGGUCUGA
M.mulatta         ACCAGUCUC-AAGCCCA-UGGGGUAG-GCGG-U------GAUGGA
X.laevis          UUGUGU-AUA-AACCCACC-CUGUGG-GCUGGGC---AGGUCUGA
Human_1           CUGGGU-GGA-AACCUACC-CUGUGG-GCAC-CC---AUGUCCGA
Rat_1             CUGUGC-AGA-AACCC-CC-ACGUGG-GCUG-CC---AGGUUUGA
Mouse_1           CUGGGC-AGA-AACCC--C-AUGUGG-GCCGCCC---AGGUUUGA
Cow_1             CUGUGC-GGA-AACCC--C-CCGCGG-GCUGCCC---AUGUCUGA
M.fascicularis    CUGGGU-GGA-AACCCACC-CUGUGG-GCAC-CC---AUGUCCGA
Pig               CUGCGC-AGA-AACCC--U-CCGCGG-GCUGCCC---ACGUCUGA
E.granulosus      AGACCCGU-CAACCGAGCU-UUGCGG---AGCGGAUCUUGACG-A
N.vectensis       AAGUUG-GCA-AACCCUUUAAAGUGGAGCAGCUU---A-ACCGGA

cons                         *                                 


Contig15518_Con   C-----UGUCGAACACCACAGCAAUAAAGGC
Human             AC-AACUGUCAA--AUCAGUU---UU-AGCA
Rat               A--AGCUGUCGA---UC--UGUUGGGUUCAA
Horse             AC-AGCUGUCGA--AGC-------AG-UUUU
Cow               AC----CGUCAA--AGCAGUUUUCUCUUGGC
Chicken           A----CUGUCAA-UAUGCCCAUUG--CAUUG
T.thermophila     AG-AU---UAU-U--G-AUU-UUGU-UGUAG
T.thermophila_1   AA-AA---UAU-A--U-GAC-AA-U-UUAGA
Dog               GC-AACUGUCGA---GC-------AGUUUUA
Mouse             AG-AGCUGCCGG--GUC--UGUUGAG-CUCA
C.briggsae        UG-CG---CUC-U--G-AAA-AC-G-GUCAC
Orangutan         -C-AACUGUCAA-GAUGAGUUUUAGC-AUGA
C.elegans         UG-CG---CCU-C--C-AAA-AC-G-UCCAC
M.mulatta         AC-AACUGUCAA--AUCAGUUUUAGCAUGAC
X.laevis          GC-AUC--UCUGA-UUCUCUGUUACGUGUAA
Human_1           GC-CC---CCUGG--CAUUU-CUGCA-AUGC
Rat_1             AC-CC----CUGG--CAUUU-CUGGAGUGCU
Mouse_1           AC-CC----CUGG--CAUUU-CUAGAGCACU
Cow_1             GC-CC----CUGG--CAUCA-CC-CG-GCGC
M.fascicularis    GC-CC---CCUGG--CAUUU-CUGCA-GUGC
Pig               GG-AC---CCUGG--CAU---UU-CC-AGAG
E.granulosus      UG-UA---GGU-C--G-UCUCGUGU-GCUCC
N.vectensis       UGAAGG--CGUGU-A--CUUGGUUCCUCGCA

cons