Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
(448 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 226 4e-59
gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75... 29 6.8
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 226 bits (575), Expect = 4e-59, Method: Composition-based stats.
Identities = 154/410 (37%), Positives = 203/410 (49%), Gaps = 22/410 (5%)
Frame = -2
Query: 38 FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGL-TRPDVRPPLGRGLVGGQEEA 96
F+P +LGL ++LT ++ +KG CK+PQ LL LL + T P GQE+
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEVSTTP------------GQED- 2090957
Query: 97 SQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-----GLSLVQTTDFFYPLVEDPYMMG 151
+GMD ++PL H L LV TTDFF+P V DP++ G
Sbjct: 2090956 --------------------VGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQG 2090837
Query: 152 RIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXX 211
+I ANVLSDLY+MGI+ CD R T ++KGF +
Sbjct: 2090836 QIGAANVLSDLYSMGISHCDTMLMLLAASTDMDEHERMVTTREIMKGFAERAQLAATTVT 2090657
Query: 212 XXXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPE 270
NPW +IGGVA V E + P + GDVLVLTKPLG QVAVN QWL P
Sbjct: 2090656 GGQTVMNPWPLIGGVAIAVVSEVEMVRPSGLLRAGDVLVLTKPLGCQVAVNLKQWLLRPT 2090477
Query: 271 RWNKVKMV--VSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQN 328
+ + ++ E+E Y A +M LNR A LM +AH ATD+TGFGILGH+ N
Sbjct: 2090476 PLYEEAIAEHITPGEIEELYNMATDSMRRLNREGARLMGKHSAHGATDVTGFGILGHANN 2090297
Query: 329 LAKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICLPREQ 382
Q + V+ LP+ A SK + ++ LL+G SAETSGGLL+ P
Sbjct: 2090296 FGAAQNVGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTT 2090117
Query: 383 AAR-FCSEIKSSKYGEGHQAWIVGIVEKGNRT------ARIIDKPRVIEV 425
AA FC+E+ + G +WIVG VE+ AR+ D +IEV
Sbjct: 2090116 AAEAFCAELTEAD--GGCPSWIVGRVEERATNAADGVYARLTDGYEIIEV 2089973
>gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 10
Length = 612479
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 77 TRPDVRPPLGRGLVGGQEEASQEA-GLPAGAGPS 109
TRP RP GRG G+EE + A P AGPS
Sbjct: 186280 TRPTRRPIWGRGRESGKEERERRAEAPPLTAGPS 186179
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
(370 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 243 2e-64
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 243 bits (619), Expect = 2e-64, Method: Composition-based stats.
Identities = 148/384 (38%), Positives = 212/384 (55%), Gaps = 17/384 (4%)
Frame = -2
Query: 2 FQPEKHGLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAVI 61
F P GL +FQLT +T G SCK+PQ L L+ D GMDC+++
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEVSTTPGQED-----VGMDCSIV 2090933
Query: 62 PL----KRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVST 117
PL + + L+ T DFF+P V+DP L G+I ANVLSD+Y++G++ DT+ M+++
Sbjct: 2090932 PLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGISHCDTMLMLLAA 2090753
Query: 118 STSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEI 177
ST E ER V +MKGF + T + Q +NPW +IGG+A +V E+
Sbjct: 2090752 STDMDEHERMVTTREIMKGFAERAQLAA---TTVTGGQTVMNPWPLIGGVAIAVVSEVEM 2090582
Query: 178 ILPSN-AQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSE-CSDADIKETFEIAVK 235
+ PS + GDVLVLTKPLG Q+A++ W L T Y++ ++E + +I+E + +A
Sbjct: 2090581 VRPSGLLRAGDVLVLTKPLGCQVAVNLKQWLLRPTPLYEEAIAEHITPGEIEELYNMATD 2090402
Query: 236 SMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQK-----EKVLFQINKLPIIK 290
SM LN+ A LM K+ AH ATD+TGFG+LGHANN Q + + +LP+ K
Sbjct: 2090401 SMRRLNREGARLMGKHSAHGATDVTGFGILGHANNFGAAQNVGDAPRSLCLVLERLPMFK 2090222
Query: 291 NVLKFSTLVGQSTKFRSGRSVETSGGLLICLPA-DAADKFCRDFEEATNGEQKSFQIGHV 349
+ S + + G S ETSGGLL+ P+ AA+ FC + EA +G S+ +G V
Sbjct: 2090221 TAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTTAAEAFCAELTEA-DGGCPSWIVGRV 2090045
Query: 350 T--AANESDAV---LCEDVEFIEV 368
A N +D V L + E IEV
Sbjct: 2090044 EERATNAADGVYARLTDGYEIIEV 2089973
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
(452 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 227 2e-59
gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75... 33 0.58
gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75... 30 2.8
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 227 bits (578), Expect = 2e-59, Method: Composition-based stats.
Identities = 151/409 (36%), Positives = 197/409 (48%), Gaps = 21/409 (5%)
Frame = -2
Query: 41 FEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPPLTSXXXXXXXXXX 100
F+P +LG ++LT ++ +KG CK+PQ LL LL+ +
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEV--------------------- 2090981
Query: 101 XXXXXSTRPGPGSAFPSLSIGMDSCVIPLRHG-----GLSLVQTTDFFYPLVEDPYMMGR 155
ST PG +GMD ++PL H L LV TTDFF+P V DP++ G+
Sbjct: 2090980 -----STTPG------QEDVGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 2090834
Query: 156 IACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKGFRDXXXXXXXXXXX 215
I ANVLSDLY+MGI+ CD E ER T ++KGF +
Sbjct: 2090833 IGAANVLSDLYSMGISHCDTMLMLLAASTDMDEHERMVTTREIMKGFAERAQLAATTVTG 2090654
Query: 216 XXXXXNPWIIIGGVATVVCQQNEFIMPDSAV-VGDVLVLTKPLGTQVAANAHQWLDNPEK 274
NPW +IGGVA V + E + P + GDVLVLTKPLG QVA N QWL P
Sbjct: 2090653 GQTVMNPWPLIGGVAIAVVSEVEMVRPSGLLRAGDVLVLTKPLGCQVAVNLKQWLLRPTP 2090474
Query: 275 W--NKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 332
I ++ E+E Y A +M LNR A LM +AH ATD+TGFGILGH+ N
Sbjct: 2090473 LYEEAIAEHITPGEIEELYNMATDSMRRLNREGARLMGKHSAHGATDVTGFGILGHANNF 2090294
Query: 333 AKQQK-----NEVSFVIHNLPXXXXXXXXXXXXG-RFGLLQGTSAETSGGLLICLPREQA 386
Q + V+ LP ++ LL+G SAETSGGLL+ P A
Sbjct: 2090293 GAAQNVGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTTA 2090114
Query: 387 AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRT------ARIIDKPRVIEV 428
A FC+E+ + G +WIVG VE+ AR+ D +IEV
Sbjct: 2090113 AEAFCAELTEAD--GGCPSWIVGRVEERATNAADGVYARLTDGYEIIEV 2089973
>gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 22
Length = 657844
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 107 TRPGPGSAFPSLSIGMDSCVIPLRH 131
T G G A PSL++G S VIPLRH
Sbjct: 206133 TEHGVGLAAPSLAVGKHSAVIPLRH 206207
>gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 16
Length = 696353
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -1
Query: 26 PAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQ 85
PA + +FS+YRP QTL PS T+ + + C P T T ++
Sbjct: 124073 PATLAGSLAFSSYRPLLLQTLQGRPS---TTPAARRSCCCSTPCAT-----SSTTSTQVR 123918
Query: 86 PPLT 89
PPLT
Sbjct: 123917 PPLT 123906
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= LmjF36_01_20050601_V5.2:subseq(2091000,6000).pep # sps2 #
L.major
(352 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 576 e-165
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 576 bits (1484), Expect = e-165, Method: Composition-based stats.
Identities = 286/352 (81%), Positives = 297/352 (84%)
Frame = -2
Query: 1 FDPVSLGLPAEFQLTDYTRLKGCSCXXXXXXXXXXXXXXSATPGQKDVGMDCSIVPLHHT 60
FDP+SLGLPAEFQLTDYTRLKGCSC S TPGQ+DVGMDCSIVPLHHT
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEVSTTPGQEDVGMDCSIVPLHHT 2090918
Query: 61 NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMD 120
NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGI CDTMLMLLAAST+MD
Sbjct: 2090917 NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGISHCDTMLMLLAASTDMD 2090738
Query: 121 EHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGXXXXXXXXXXXXRPTGLLC 180
EHER++TTREIMKGFAERA+LA TTVTGGQTVMNPWPLIGG RP+GLL
Sbjct: 2090737 EHERMVTTREIMKGFAERAQLAATTVTGGQTVMNPWPLIGGVAIAVVSEVEMVRPSGLLR 2090558
Query: 181 AGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE 240
AGD+LVLTKPLGCQVAVNLKQWLLRP+PLYEEAIA HI+P EIEELYNMATDSMRRLNRE
Sbjct: 2090557 AGDVLVLTKPLGCQVAVNLKQWLLRPTPLYEEAIAEHITPGEIEELYNMATDSMRRLNRE 2090378
Query: 241 GARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERLPMFKTAVAASKQ 300
GARLM KH AHGATDVTGFGILGHANNFGAAQ VGDAPRSLCLVLERLPMFKTAVAASK+
Sbjct: 2090377 GARLMGKHSAHGATDVTGFGILGHANNFGAAQNVGDAPRSLCLVLERLPMFKTAVAASKR 2090198
Query: 301 MNDKYRLLEGYSAETSGGLLVXXXXXXXXXXXXXXXXXVDGGCPSWIVGHVE 352
MNDKYRLLEGYSAETSGGLLV DGGCPSWIVG VE
Sbjct: 2090197 MNDKYRLLEGYSAETSGGLLVAFPSTTAAEAFCAELTEADGGCPSWIVGRVE 2090042
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|83779010|ref|NP_076982.3| SECIS binding protein 2 [Homo
sapiens]
(854 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
***** No hits found ******Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
(448 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 226 4e-59
gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75... 29 6.8
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 226 bits (575), Expect = 4e-59, Method: Composition-based stats.
Identities = 154/410 (37%), Positives = 203/410 (49%), Gaps = 22/410 (5%)
Frame = -2
Query: 38 FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGL-TRPDVRPPLGRGLVGGQEEA 96
F+P +LGL ++LT ++ +KG CK+PQ LL LL + T P GQE+
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEVSTTP------------GQED- 2090957
Query: 97 SQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-----GLSLVQTTDFFYPLVEDPYMMG 151
+GMD ++PL H L LV TTDFF+P V DP++ G
Sbjct: 2090956 --------------------VGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQG 2090837
Query: 152 RIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXX 211
+I ANVLSDLY+MGI+ CD R T ++KGF +
Sbjct: 2090836 QIGAANVLSDLYSMGISHCDTMLMLLAASTDMDEHERMVTTREIMKGFAERAQLAATTVT 2090657
Query: 212 XXXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPE 270
NPW +IGGVA V E + P + GDVLVLTKPLG QVAVN QWL P
Sbjct: 2090656 GGQTVMNPWPLIGGVAIAVVSEVEMVRPSGLLRAGDVLVLTKPLGCQVAVNLKQWLLRPT 2090477
Query: 271 RWNKVKMV--VSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQN 328
+ + ++ E+E Y A +M LNR A LM +AH ATD+TGFGILGH+ N
Sbjct: 2090476 PLYEEAIAEHITPGEIEELYNMATDSMRRLNREGARLMGKHSAHGATDVTGFGILGHANN 2090297
Query: 329 LAKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICLPREQ 382
Q + V+ LP+ A SK + ++ LL+G SAETSGGLL+ P
Sbjct: 2090296 FGAAQNVGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTT 2090117
Query: 383 AAR-FCSEIKSSKYGEGHQAWIVGIVEKGNRT------ARIIDKPRVIEV 425
AA FC+E+ + G +WIVG VE+ AR+ D +IEV
Sbjct: 2090116 AAEAFCAELTEAD--GGCPSWIVGRVEERATNAADGVYARLTDGYEIIEV 2089973
>gi|154333356|ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 10
Length = 612479
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 77 TRPDVRPPLGRGLVGGQEEASQEA-GLPAGAGPS 109
TRP RP GRG G+EE + A P AGPS
Sbjct: 186280 TRPTRRPIWGRGRESGKEERERRAEAPPLTAGPS 186179
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
(370 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 243 2e-64
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 243 bits (619), Expect = 2e-64, Method: Composition-based stats.
Identities = 148/384 (38%), Positives = 212/384 (55%), Gaps = 17/384 (4%)
Frame = -2
Query: 2 FQPEKHGLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAVI 61
F P GL +FQLT +T G SCK+PQ L L+ D GMDC+++
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEVSTTPGQED-----VGMDCSIV 2090933
Query: 62 PL----KRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVST 117
PL + + L+ T DFF+P V+DP L G+I ANVLSD+Y++G++ DT+ M+++
Sbjct: 2090932 PLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGISHCDTMLMLLAA 2090753
Query: 118 STSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEI 177
ST E ER V +MKGF + T + Q +NPW +IGG+A +V E+
Sbjct: 2090752 STDMDEHERMVTTREIMKGFAERAQLAA---TTVTGGQTVMNPWPLIGGVAIAVVSEVEM 2090582
Query: 178 ILPSN-AQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSE-CSDADIKETFEIAVK 235
+ PS + GDVLVLTKPLG Q+A++ W L T Y++ ++E + +I+E + +A
Sbjct: 2090581 VRPSGLLRAGDVLVLTKPLGCQVAVNLKQWLLRPTPLYEEAIAEHITPGEIEELYNMATD 2090402
Query: 236 SMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQK-----EKVLFQINKLPIIK 290
SM LN+ A LM K+ AH ATD+TGFG+LGHANN Q + + +LP+ K
Sbjct: 2090401 SMRRLNREGARLMGKHSAHGATDVTGFGILGHANNFGAAQNVGDAPRSLCLVLERLPMFK 2090222
Query: 291 NVLKFSTLVGQSTKFRSGRSVETSGGLLICLPA-DAADKFCRDFEEATNGEQKSFQIGHV 349
+ S + + G S ETSGGLL+ P+ AA+ FC + EA +G S+ +G V
Sbjct: 2090221 TAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTTAAEAFCAELTEA-DGGCPSWIVGRV 2090045
Query: 350 T--AANESDAV---LCEDVEFIEV 368
A N +D V L + E IEV
Sbjct: 2090044 EERATNAADGVYARLTDGYEIIEV 2089973
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
(452 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 227 2e-59
gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75... 33 0.58
gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75... 30 2.8
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 227 bits (578), Expect = 2e-59, Method: Composition-based stats.
Identities = 151/409 (36%), Positives = 197/409 (48%), Gaps = 21/409 (5%)
Frame = -2
Query: 41 FEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPPLTSXXXXXXXXXX 100
F+P +LG ++LT ++ +KG CK+PQ LL LL+ +
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEV--------------------- 2090981
Query: 101 XXXXXSTRPGPGSAFPSLSIGMDSCVIPLRHG-----GLSLVQTTDFFYPLVEDPYMMGR 155
ST PG +GMD ++PL H L LV TTDFF+P V DP++ G+
Sbjct: 2090980 -----STTPG------QEDVGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 2090834
Query: 156 IACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKGFRDXXXXXXXXXXX 215
I ANVLSDLY+MGI+ CD E ER T ++KGF +
Sbjct: 2090833 IGAANVLSDLYSMGISHCDTMLMLLAASTDMDEHERMVTTREIMKGFAERAQLAATTVTG 2090654
Query: 216 XXXXXNPWIIIGGVATVVCQQNEFIMPDSAV-VGDVLVLTKPLGTQVAANAHQWLDNPEK 274
NPW +IGGVA V + E + P + GDVLVLTKPLG QVA N QWL P
Sbjct: 2090653 GQTVMNPWPLIGGVAIAVVSEVEMVRPSGLLRAGDVLVLTKPLGCQVAVNLKQWLLRPTP 2090474
Query: 275 W--NKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 332
I ++ E+E Y A +M LNR A LM +AH ATD+TGFGILGH+ N
Sbjct: 2090473 LYEEAIAEHITPGEIEELYNMATDSMRRLNREGARLMGKHSAHGATDVTGFGILGHANNF 2090294
Query: 333 AKQQK-----NEVSFVIHNLPXXXXXXXXXXXXG-RFGLLQGTSAETSGGLLICLPREQA 386
Q + V+ LP ++ LL+G SAETSGGLL+ P A
Sbjct: 2090293 GAAQNVGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTTA 2090114
Query: 387 AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRT------ARIIDKPRVIEV 428
A FC+E+ + G +WIVG VE+ AR+ D +IEV
Sbjct: 2090113 AEAFCAELTEAD--GGCPSWIVGRVEERATNAADGVYARLTDGYEIIEV 2089973
>gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 22
Length = 657844
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 107 TRPGPGSAFPSLSIGMDSCVIPLRH 131
T G G A PSL++G S VIPLRH
Sbjct: 206133 TEHGVGLAAPSLAVGKHSAVIPLRH 206207
>gi|154335056|ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 16
Length = 696353
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -1
Query: 26 PAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQ 85
PA + +FS+YRP QTL PS T+ + + C P T T ++
Sbjct: 124073 PATLAGSLAFSSYRPLLLQTLQGRPS---TTPAARRSCCCSTPCAT-----SSTTSTQVR 123918
Query: 86 PPLT 89
PPLT
Sbjct: 123917 PPLT 123906
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= LmjF36_01_20050601_V5.2:subseq(2091000,6000).pep # sps2 #
L.major
(352 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 576 e-165
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 576 bits (1484), Expect = e-165, Method: Composition-based stats.
Identities = 286/352 (81%), Positives = 297/352 (84%)
Frame = -2
Query: 1 FDPVSLGLPAEFQLTDYTRLKGCSCXXXXXXXXXXXXXXSATPGQKDVGMDCSIVPLHHT 60
FDP+SLGLPAEFQLTDYTRLKGCSC S TPGQ+DVGMDCSIVPLHHT
Sbjct: 2091097 FDPISLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQEVSTTPGQEDVGMDCSIVPLHHT 2090918
Query: 61 NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMD 120
NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGI CDTMLMLLAAST+MD
Sbjct: 2090917 NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGISHCDTMLMLLAASTDMD 2090738
Query: 121 EHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGXXXXXXXXXXXXRPTGLLC 180
EHER++TTREIMKGFAERA+LA TTVTGGQTVMNPWPLIGG RP+GLL
Sbjct: 2090737 EHERMVTTREIMKGFAERAQLAATTVTGGQTVMNPWPLIGGVAIAVVSEVEMVRPSGLLR 2090558
Query: 181 AGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE 240
AGD+LVLTKPLGCQVAVNLKQWLLRP+PLYEEAIA HI+P EIEELYNMATDSMRRLNRE
Sbjct: 2090557 AGDVLVLTKPLGCQVAVNLKQWLLRPTPLYEEAIAEHITPGEIEELYNMATDSMRRLNRE 2090378
Query: 241 GARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERLPMFKTAVAASKQ 300
GARLM KH AHGATDVTGFGILGHANNFGAAQ VGDAPRSLCLVLERLPMFKTAVAASK+
Sbjct: 2090377 GARLMGKHSAHGATDVTGFGILGHANNFGAAQNVGDAPRSLCLVLERLPMFKTAVAASKR 2090198
Query: 301 MNDKYRLLEGYSAETSGGLLVXXXXXXXXXXXXXXXXXVDGGCPSWIVGHVE 352
MNDKYRLLEGYSAETSGGLLV DGGCPSWIVG VE
Sbjct: 2090197 MNDKYRLLEGYSAETSGGLLVAFPSTTAAEAFCAELTEADGGCPSWIVGRVE 2090042
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|83779010|ref|NP_076982.3| SECIS binding protein 2 [Homo
sapiens]
(854 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
***** No hits found ******