Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
(195 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75... 52 2e-07
gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75... 35 0.032
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 27 6.4
>gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 27
Length = 1217395
Score = 52.4 bits (124), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 25/197 (12%)
Frame = +1
Query: 18 EASANLGGVPSKRLKMQYATG------------PL-----LKFQICVSUGYRRVFEEYMR 60
E A LG PS + AT PL L+ C GY + FE+ +
Sbjct: 122257 EGEAKLGDAPSHSQQKGRATSGYAGAKKTLSGRPLSVVHKLEILYCTG*GYAKYFEDMKQ 122436
Query: 61 VISQRYP---DIRIEGENYLPQPIYRHIAS-FLSVFKLVLIGLIIVGKDPFAFFGMQAPS 116
+ + P D++I G Y P P R +A+ S L +G+ + G AF A +
Sbjct: 122437 QLQRVLPNAGDVQIVGGTY-PTPPARALAAKVCSTAFLASLGMALAGGQ-LAFLPPAALN 122610
Query: 117 --IWQWGQENKVYACMMVF--FLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ 172
+ Q G M+V FL NMI + TGAFE+TL+ ++SKL++G +P+++
Sbjct: 122611 FIVQQRG--------MLVGTGFLLNMIGSSLTQTGAFEVTLDGELIFSKLQAGAVPTVEV 122766
Query: 173 LVQILDNEMKLNVHMDS 189
+ +I+ + L+ + D+
Sbjct: 122767 MRRIILQKTLLDKYGDN 122817
>gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 34
Length = 2012684
Score = 35.0 bits (79), Expect = 0.032, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -2
Query: 3 LLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVI 62
LL L ++A A + + S + G Y G + + + C + R + R++
Sbjct: 25279 LLTTLDLSACASIGTVKSTSWGAKEQPFNVQSYVEGEVARLEACAPVDFVR---QNTRML 25109
Query: 63 SQRYP-DIRIEGENYLPQPIYR 83
S+ YP RI+ NY P P++R
Sbjct: 25108 SRTYPAGTRIDSSNYDPMPVWR 25043
Score = 27.3 bits (59), Expect = 6.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 70 RIEGENYLPQPIYRHIASFLSVFKLVLIGLII 101
R +G+ + P P + I F+SVF L L G ++
Sbjct: 1477054 RRKGKKHTPPPAFSCITHFVSVFLLSLFGALL 1476959
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = -1
Query: 17 SEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENY 76
+E SA G R K GP L ++C S G R ++R + + Y
Sbjct: 474080 TEGSAGCAGPA*DRRKSLPCAGPPLAGEMCTSRGLPRTGRLRRHRCARRRSSLAQKRRRY 473901
Query: 77 LPQPIYRHIASFL 89
P P+ R AS L
Sbjct: 473900 RPPPLARDTASSL 473862
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
(195 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75... 52 2e-07
gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75... 35 0.033
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 27 6.4
>gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 27
Length = 1217395
Score = 52.4 bits (124), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 25/197 (12%)
Frame = +1
Query: 18 EASANLGGVPSKRLKMQYATG------------PL-----LKFQICVSUGYRRVFEEYMR 60
E A LG PS + AT PL L+ C GY + FE+ +
Sbjct: 122257 EGEAKLGDAPSHSQQKGRATSGYAGAKKTLSGRPLSVVHKLEILYCTG*GYAKYFEDMKQ 122436
Query: 61 VISQRYP---DIRIEGENYLPQPIYRHIAS-FLSVFKLVLIGLIIVGKDPFAFFGMQAPS 116
+ + P D++I G Y P P R +A+ S L +G+ + G AF A +
Sbjct: 122437 QLQRVLPNAGDVQIVGGTY-PTPPARALAAKVCSTAFLASLGMALAGGQ-LAFLPPAALN 122610
Query: 117 --IWQWGQENKVYACMMVF--FLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ 172
+ Q G M+V FL NMI + TGAFE+TL+ ++SKL++G +P+++
Sbjct: 122611 FIVQQRG--------MLVGTGFLLNMIGSSLTQTGAFEVTLDGELIFSKLQAGAVPTVEV 122766
Query: 173 LVQILDNEMKLNVHMDS 189
+ +I+ + L+ + D+
Sbjct: 122767 MRRIILQKTLLDKYGDN 122817
>gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 34
Length = 2012684
Score = 35.0 bits (79), Expect = 0.033, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -2
Query: 3 LLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVI 62
LL L ++A A + + S + G Y G + + + C + R + R++
Sbjct: 25279 LLTTLDLSACASIGTVKSTSWGAKEQPFNVQSYVEGEVARLEACAPVDFVR---QNTRML 25109
Query: 63 SQRYP-DIRIEGENYLPQPIYR 83
S+ YP RI+ NY P P++R
Sbjct: 25108 SRTYPAGTRIDSSNYDPMPVWR 25043
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 70 RIEGENYLPQPIYRHIASFLSVFKLVLIGLII 101
R +G+ + P P + I F+SVF L L G ++
Sbjct: 1477054 RRKGKKHTPPPAFSCITHFVSVFLLSLFGALL 1476959
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = -1
Query: 17 SEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENY 76
+E SA G R K GP L ++C S G R ++R + + Y
Sbjct: 474080 TEGSAGCAGPA*DRRKSLPCAGPPLAGEMCTSRGLPRTGRLRRHRCARRRSSLAQKRRRY 473901
Query: 77 LPQPIYRHIASFL 89
P P+ R AS L
Sbjct: 473900 RPPPLARDTASSL 473862
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000046_1.0 # Protein # Selenoprotein T (SelT) # Drosophila
melanogaster # Complete
(198 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75... 54 7e-08
>gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 27
Length = 1217395
Score = 53.9 bits (128), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Frame = +1
Query: 39 NIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQ---IQVNGGNYDPPGLNYYLSKMIFAL 95
++ + LYC GY K FED L P +Q+ GG Y P +K + +
Sbjct: 122362 SVVHKLEILYCTG*GYAKYFEDMKQQLQRVLPNAGDVQIVGGTYPTPPARALAAK-VCST 122538
Query: 96 KIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEIT 155
+ + + A FL P + + + FL NM+ + L +GAFE+T
Sbjct: 122539 AFLASLGMALAGGQLAFL----PPAALNFIVQQRGMLVGTGFLLNMIGSSLTQTGAFEVT 122706
Query: 156 LNDVPVWSKLQTGRFPSPEVLFQII 180
L+ ++SKLQ G P+ EV+ +II
Sbjct: 122707 LDGELIFSKLQAGAVPTVEVMRRII 122781
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= Tb927.5.860 |SelT||selenoprotein, putative|Trypanosoma
brucei|chr 5|||Manual
(278 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75... 111 7e-25
gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75... 30 1.9
>gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 27
Length = 1217395
Score = 111 bits (277), Expect = 7e-25, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 92/155 (59%)
Frame = +1
Query: 95 TVQHEVRVEYCSG*GYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFRE 154
+V H++ + YC+G*GY +++E++ + L R LP ++ VG Y R
Sbjct: 122362 SVVHKLEILYCTG*GYAKYFEDMKQQLQRVLP---------NAGDVQIVGGTYPTPPARA 122514
Query: 155 FIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSG 214
+ ST FLAS+ ++ L LPP +I Q RGM+VG GF++NM+ SSL Q+G
Sbjct: 122515 LAAKVCSTAFLASLGMALAGGQL-AFLPPAALNFIVQQRGMLVGTGFLLNMIGSSLTQTG 122691
Query: 215 AFEVYLNGSLIYSKLETGAVPTAETLADHILRQII 249
AFEV L+G LI+SKL+ GAVPT E + IL++ +
Sbjct: 122692 AFEVTLDGELIFSKLQAGAVPTVEVMRRIILQKTL 122796
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Frame = +2
Query: 98 HEVRVEYCSG*GYRRHYEEVAESLLRSLPPELREQQKGKKPFI---KFVGVVYSVGAFRE 154
HEV + GY +EE L EL+E + P + +G V + R
Sbjct: 120077 HEVLAHHNEANGYGSEFEE--------LRKELQESEAVSLPNLADLDIIGQVSPISPNRV 120232
Query: 155 FIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSG 214
+ L F A++ ++F ++ +P + Q R +++ ++++++ + L S
Sbjct: 120233 LVSKALQGAFFATLGVAFMGDQIK-FIPESARAVLLQRRSLIISGSLLLSVLSRAALPSN 120409
Query: 215 AFEVYLNGSLIYSKLETGA-VPTAETLADHILRQII 249
AFEV+L+G LIYS L+TG VPTAE L++ +L Q +
Sbjct: 120410 AFEVFLDGELIYSALDTGGRVPTAELLSNLLLEQTL 120517
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +1
Query: 8 ISFSLALLIAAFLAANAGSATNADNEATDYSSHRYKYLEMLKEADLKQMLHEKGEA---F 64
I SLALL F A A SA + + Y YL ML E DL+Q+LHEK
Sbjct: 121831 IVVSLALLFV-FAACRANSAHEV-QPTQEGNKDPYAYLGMLDEVDLQQILHEKTHGQVQV 122004
Query: 65 HHLRSKRELILAVLKLEKREEA 86
RSK EL+ AV K+E+RE+A
Sbjct: 122005 SAFRSKEELVAAVRKIEEREDA 122070
>gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 30
Length = 1359875
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 1 MRNRFVRISFSLALLIAAFLAANAGSATNADNEATDYSSHR 41
+R R VRI+ + L I LA N+GSA + +HR
Sbjct: 514636 LRIRIVRITVIMVLFIYRLLAVNSGSAVPKGHRCCAICTHR 514758
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.