Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
(116 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75... 50 4e-07
gi|154338087|ref|NC_009315.1| Leishmania braziliensis MHOM/BR/75... 29 0.56
gi|154334404|ref|NC_009306.1| Leishmania braziliensis MHOM/BR/75... 26 4.1
gi|154333778|ref|NC_009304.1| Leishmania braziliensis MHOM/BR/75... 26 4.2
gi|154332242|ref|NC_009298.1| Leishmania braziliensis MHOM/BR/75... 26 5.3
gi|154336103|ref|NC_009311.1| Leishmania braziliensis MHOM/BR/75... 25 7.1
gi|154344351|ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75... 25 7.2
>gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 28
Length = 1173595
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +3
Query: 9 GEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK 68
G + + FE GVYVCA C L+ S K+A WP F + I V ++P+ + ++
Sbjct: 1056024 GGKYDDVFEEGVYVCAGCKTPLYLSSMKFACGCGWPGFYDCI-PKRVREQPDRD-GHRVE 1056197
Query: 69 VSCGKCGNGLGHEFLNDGPK--PGQSRFUIFSSSLKFVP 105
+ C C LGH F N+G + P R + ++S+ P
Sbjct: 1056198 IVCNACNGHLGHVFRNEGFRNPPPNERHCVNNTSIVLQP 1056314
>gi|154338087|ref|NC_009315.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 23
Length = 797353
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 37 YAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNG 77
Y H + P IH S A E NRS + + +CGNG
Sbjct: 89375 YEHVAASPVVVARIHQPSAALN-EGNRSRVMSATDRRCGNG 89256
>gi|154334404|ref|NC_009306.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 14
Length = 654078
Score = 26.2 bits (56), Expect = 4.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 33 SRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNG 77
+R+ AH P T+ V +RPEH R++ L+ G+C NG
Sbjct: 615149 TRNTRAHVLCCPEKTQHFSL-GVKQRPEHTRAK*LRRGPGRCVNG 615018
>gi|154333778|ref|NC_009304.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 12
Length = 466080
Score = 26.2 bits (56), Expect = 4.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +3
Query: 19 GVYVCAKCGYELFSSRSKYA-----HSSPWPAFTETIHADSVAKRPEHNRSEA 66
G+ A GYE SSR++ A H+ P P+ T+ + + + RP +A
Sbjct: 233241 GIPPAAHSGYETNSSRNELAQSHQRHAHPMPSLTQAHPSTAGSARPPQELQQA 233399
Score = 25.0 bits (53), Expect = 9.5, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Frame = +1
Query: 35 SKYAH-----SSPWPAFTETIHADSVAKRPE----HNRSEALKVSCGKCGNGLGHEFLND 85
++Y H S+P P H S+ PE + RS++L+ + +C + LG E +
Sbjct: 312238 TRYKHDCRSTSTPLPP----THTHSLTHIPERKKTYRRSQSLQHAAQRCLS-LGTEAVP- 312399
Query: 86 GPKPGQSRFUIFSSSLKFVPKGKETSAS 113
PKP ++R + + + +P+G++ S
Sbjct: 312400 -PKPPRNRGGVRRARVNPIPRGRDQGGS 312480
>gi|154332242|ref|NC_009298.1| Leishmania braziliensis
MHOM/BR/75/M2904 chromosome 5
Length = 459355
Score = 25.8 bits (55), Expect = 5.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 26 CGYELFSSRSKYAHSSPWPAFTETIH 51
C YELF R SP P F T+H
Sbjct: 9221 CFYELFRYRESQRKPSP*PTFLTTLH 9144
>gi|154336103|ref|NC_009311.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 19
Length = 754788
Score = 25.4 bits (54), Expect = 7.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 59 PEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFUI 96
PE R +AL SCG +G + L G SRF +
Sbjct: 229722 PEPRRLQALNQSCGMLSSGTLLQSLGSGSVSTHSRFTM 229835
>gi|154344351|ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 33
Length = 1504429
Score = 25.4 bits (54), Expect = 7.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 58 RPEHNRSEALKVSCGKCGNGLGHEFLNDGP 87
R ++ R+ L +SC CG G +F D P
Sbjct: 1076356 RGQNGRTSQLPLSCFTCGRGGAGKFPRDAP 1076445
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
(199 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75... 78 3e-15
gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75... 29 1.8
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 29 2.5
gi|154342829|ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75... 28 3.5
gi|154344351|ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75... 28 3.8
gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75... 28 5.4
gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75... 27 7.7
gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75... 27 7.8
>gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 28
Length = 1173595
Score = 78.2 bits (191), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 14/160 (8%)
Frame = +3
Query: 53 LGEAGSLATCELPLAK--------SEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGM 104
G A L C P K +EW++ LT +++ + REKGT+P G Y + E G+
Sbjct: 1055883 FGMAKPLTNCAAPHEKDGSKDVGDAEWRRVLTSQEYCILREKGTDP-VGGKYDDVFEEGV 1056059
Query: 105 YHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRL--DTSLGSARTEVV 162
Y C C +PL+ S K+ G GWP F + I +R+ R E+V
Sbjct: 1056060 YVCAGCKTPLYLSSMKFACGCGWPGFYDC------------IPKRVREQPDRDGHRVEIV 1056203
Query: 163 CKQCEAHLGHVFPD----GPGPNGQRFCINSVALKFKPRK 198
C C HLGHVF + P PN +R C+N+ ++ +P K
Sbjct: 1056204 CNACNGHLGHVFRNEGFRNPPPN-ERHCVNNTSIVLQPTK 1056320
>gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 18
Length = 708397
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 33 APRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKL 75
A RR R A GGP GPG+ G L + +EW++ L
Sbjct: 626132 AARRV*RCSAPRGGPAAGPGVSSGGGLVFNMVASGCAEWKRHL 626260
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 33 APRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKL 75
A RR R A GGP GPG+ G L + +EW++ L
Sbjct: 608344 AARRV*RCSAPRGGPAAGPGVSSGGGLVFNMVASGCAEWKRHL 608216
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 33 APRRAVRGQAGGGGPGTGPGLGEAGSLATC 62
A RR R A GGP GPG+ G L C
Sbjct: 606465 AARRV*RCSAPRGGPAAGPGVSSGGGLMLC 606376
Score = 26.9 bits (58), Expect = 9.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 33 APRRAVRGQAGGGGPGTGPGLGEAGSLATC 62
A RR R A GGP GPG+ G L C
Sbjct: 637865 AARRV*RCSAPRGGPAAGPGVSSGGGLVLC 637954
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = -1
Query: 5 AETGRGQRAAPE------RAARLLWLLRGLTLGTAPRRAVRGQAGGGGPG 48
++ RG R+ P ++ W LR TLG P ++VR GGGG G
Sbjct: 843623 SDISRGNRSTPRWVEMRTSSSVERWSLRWATLGRGPHKSVR*VDGGGGNG 843474
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 27/64 (42%)
Frame = -3
Query: 17 RAARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLT 76
R L W L GLTLG R V G+AG LA+C L L+ L
Sbjct: 714165 REQPLRWRLSGLTLGERARGTVSGRAGNVSFSALLSYLRKWCLASCCLALSLLPVGTFLK 713986
Query: 77 PEQF 80
P++F
Sbjct: 713985 PQRF 713974
>gi|154342829|ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 31
Length = 1602271
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 8 GRGQRAAPERAARLLWLLRGLTLGTAPRRAVRGQAGGGGP 47
GRGQ A + A R L+L LTL + + RG+ G GP
Sbjct: 1582099 GRGQEKAKKIARRHLFLFTSLTLRSNRSKLHRGERGAKGP 1582218
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +3
Query: 104 MYHCVCCDSPLF--SSEKKYCSG 124
MY C CCDS L+ + E+K C G
Sbjct: 282873 MYECCCCDSKLWLCTLERKDCDG 282941
>gi|154344351|ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 33
Length = 1504429
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 71 WQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMY 105
W +LTP + + E+GT PP + G Y
Sbjct: 51725 WLSRLTPASLWSSTERGTTPPCVASTARTTQVGHY 51621
>gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 27
Length = 1217395
Score = 27.7 bits (60), Expect = 5.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 90 PPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGT 125
PP S I +N A + H V PLF + + C GT
Sbjct: 248688 PPTSDICINKACASVAHRVTSSQPLFLARRDGCRGT 248581
>gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 30
Length = 1359875
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 VCC-DSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSA 157
VCC D PL + + YC G P SG + +G+LRR +GS+
Sbjct: 390621 VCCADVPLCTLSRLYCRIGGAPGEVVRRRESGGE*DRSGVLRRKGRYVGSS 390773
>gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 7
Length = 586128
Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +3
Query: 36 RAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTPEQFYVTREKGTEPPFS 93
R + G G G P +AG + L + W+ P+Q Y+ E G + P S
Sbjct: 352806 RGLGGDEGASGRQDAPSTADAGGY---DAALQQRPWRFNQRPQQVYIRYEDGRQLPES 352970
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
(192 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75... 79 3e-15
gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75... 31 0.43
gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75... 31 0.67
gi|154332242|ref|NC_009298.1| Leishmania braziliensis MHOM/BR/75... 30 1.1
gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75... 30 1.3
gi|154337375|ref|NC_009313.1| Leishmania braziliensis MHOM/BR/75... 30 1.4
gi|154344351|ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75... 28 2.7
gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75... 28 3.2
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 28 3.5
gi|154339612|ref|NC_009318.1| Leishmania braziliensis MHOM/BR/75... 28 3.9
gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75... 28 3.9
gi|154338087|ref|NC_009315.1| Leishmania braziliensis MHOM/BR/75... 28 4.0
gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75... 28 4.1
gi|154333587|ref|NC_009303.1| Leishmania braziliensis MHOM/BR/75... 28 5.1
gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75... 27 7.1
gi|154342829|ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75... 27 7.4
gi|154331997|ref|NC_009297.1| Leishmania braziliensis MHOM/BR/75... 27 7.5
gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75... 27 8.3
gi|154334717|ref|NC_009307.1| Leishmania braziliensis MHOM/BR/75... 27 10.0
>gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 28
Length = 1173595
Score = 78.6 bits (192), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Frame = +3
Query: 49 ELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPS 108
E R+ LT +Y + +EKGT+ G+Y + G+Y C C TPL+ S KF G GWP
Sbjct: 1055958 EWRRVLTSQEYCILREKGTDPV-GGKYDDVFEEGVYVCAGCKTPLYLSSMKFACGCGWPG 1056134
Query: 109 FHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF-DDGPR--PTGKRYCINSAALS 165
F+D I D HRVE C+ C HLGH+F ++G R P +R+C+N+ ++
Sbjct: 1056135 FYDCIPKRVREQPDRDG---HRVEIVCNACNGHLGHVFRNEGFRNPPPNERHCVNNTSIV 1056305
Query: 166 FTPADSSGTAEGG 178
P + + G
Sbjct: 1056306 LQPTKPA*ASRTG 1056344
>gi|154342106|ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 30
Length = 1359875
Score = 31.2 bits (69), Expect = 0.43, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 4/27 (14%)
Frame = +2
Query: 1 MSPRRTL----PRPLSLCLSLCLCLCL 23
++ RR+L P PL LC+SLC+C+C+
Sbjct: 806255 LANRRSLHIFFP*PLCLCISLCVCVCV 806335
>gi|154340161|ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 27
Length = 1217395
Score = 30.8 bits (68), Expect = 0.67, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 9 RPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
+P S CLSLC+C+CL + L + SGS + +VVFS
Sbjct: 287200 KPPSKCLSLCVCVCLLSCLCTPFSGSFLAR---RVVFS 287304
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRD 37
MSP PLS+CL C+CL L A+ + GS R+
Sbjct: 659694 MSPCYRGASPLSVCLPGCVCLHLFLAVSWGREGSSRE 659584
>gi|154332242|ref|NC_009298.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 5
Length = 459355
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCR 36
+SP PR LSL LSLC+C+C + S R
Sbjct: 143913 LSPSLLRPRFLSLSLSLCVCVCCPTHAATHHSALAR 144020
>gi|154335720|ref|NC_009310.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 18
Length = 708397
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -2
Query: 10 PLSLCLSLCLCLCLAAAL 27
PLSLCLS+CL +CL ++L
Sbjct: 429639 PLSLCLSVCLSVCLTSSL 429586
>gi|154337375|ref|NC_009313.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 21
Length = 732538
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 8 PRPLSLCLSLCLCLCLAAAL 27
P LS+CLS+C+CLCL A +
Sbjct: 260324 PDSLSVCLSVCVCLCLGAGV 260265
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 7 LPRPLSLCLSLCLCLCLAAAL 27
P PLSL L +C+CLC+ L
Sbjct: 268033 FPLPLSLFLCVCVCLCIGVGL 268095
>gi|154344351|ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 33
Length = 1504429
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 8 PRPLSLCLSLCLCLCLAAAL 27
P P SL LSLC+C+CL +L
Sbjct: 1132916 PHPPSLSLSLCVCVCLYISL 1132975
>gi|154337694|ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 22
Length = 657844
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 11 LSLCLSLCLCLCLAAALGSA 30
+SLC SL LC+C++ ALG A
Sbjct: 261776 MSLCTSLSLCVCVSVALGCA 261717
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 8 PRPLSLCLSLCLCLCL 23
P P +CLSLC+C+C+
Sbjct: 43735 PTPCLVCLSLCVCVCV 43688
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 8 PRPLSLCLSLCLCLCL 23
PR L LC+ +C+CLC+
Sbjct: 2121331 PRSLCLCVGVCMCLCV 2121284
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 10 PLSLCLSLCLCLCL-AAALGSAQSGSCRDK 38
PL L LSLC+CLC+ A + A G C K
Sbjct: 2602681 PLRLSLSLCVCLCVCAGGVFGASMGRCTRK 2602770
>gi|154339612|ref|NC_009318.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 26
Length = 1008282
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -2
Query: 13 LCLSLCLCLCLAAALGSA 30
LC+S+C+C+C+AA L +A
Sbjct: 249710 LCMSMCVCVCVAACLCAA 249657
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -1
Query: 13 LCLSLCLCLCLAAALGSA 30
LC+S+C+C+C+AA L +A
Sbjct: 251073 LCMSMCVCVCVAACLCAA 251020
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 11 LSLCLSLCLCLCLAAAL 27
LS+CLS+CL +CL AL
Sbjct: 685913 LSVCLSVCLSVCLFVAL 685963
>gi|154343652|ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 32
Length = 1579615
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 8 PRPLSLCLSLCLCLCLAAALG 28
PR L +C+SL LCLCL +
Sbjct: 1452282 PRTLCVCMSLSLCLCLCTTMA 1452344
>gi|154338087|ref|NC_009315.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 23
Length = 797353
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 8 PRPLSLCLSLCLCLCL 23
P P+S LSLC+C+CL
Sbjct: 307480 PAPVSFILSLCVCVCL 307527
>gi|154345382|ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 34
Length = 2012684
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 1 MSPRRTLPRPLSLCLSLCLCLCL 23
+S R + LS+CLS+CLC+C+
Sbjct: 394854 LSDVRCIAGELSVCLSVCLCVCV 394786
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Frame = +1
Query: 3 PRRTLPRPLSLCLS------LCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTP 56
PR T P + +C+ LC+CL LA +A+ G C V + L T
Sbjct: 1538896 PRTTSPLRVCVCVGVHGCVGLCVCLHLAVPFAAAREGLSVTALACAVTLCETRLAHEWTS 1539075
Query: 57 LQYH---VTQEKGTESAFEGEYT 76
L+ + + TE A +GE T
Sbjct: 1539076 LRSAPRPILK*NTTEHAAKGEGT 1539144
Score = 27.3 bits (59), Expect = 7.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSC 35
M RRT + LSL LC C+A + S SG+C
Sbjct: 1570244 MRARRTFLMSAAPLLSLALCACVAPSDSSGTSGTC 1570140
>gi|154333587|ref|NC_009303.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 11
Length = 558624
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +2
Query: 64 EKGTESAFEGEYTHH-----KDPGIYKCVVCGTPLFKS 96
+ G+E A +GE HH P Y+C+ C T LF S
Sbjct: 359783 DPGSEDAVQGERQHHLCSVCMLPASYRCLRCRTALFCS 359896
Score = 27.3 bits (59), Expect = 6.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 6 TLPRPLSLCLSLCLCLCLAAAL 27
+ P PL +C S+C CL LA L
Sbjct: 45308 STPAPLCMCTSMCACLTLAYHL 45373
>gi|154339085|ref|NC_009317.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 25
Length = 923860
Score = 27.3 bits (59), Expect = 7.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 4 RRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQE 49
R++ RPL CLS+C+C L S + S R K + V +QE
Sbjct: 196525 RKSYARPL--CLSVCVCEHTGLVLASITTASERVNKKKRGVRKRQE 196656
>gi|154342829|ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 31
Length = 1602271
Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = -1
Query: 13 LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFE 72
+C S+ C+C+ ++L + + S + C+ V ELR ++H+ G +
Sbjct: 946411 VCFSIFACVCIISSLATRRRVSLKQMDTCRSV---HELRLESIVARFHLGTHGGAHTPLV 946241
Query: 73 GEYTHHKDP 81
H + P
Sbjct: 946240 FISLHSQHP 946214
Score = 26.9 bits (58), Expect = 7.8, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = -3
Query: 13 LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFE 72
+C S+ C+C+ ++L + + S + C+ V ELR ++H+ G +
Sbjct: 928730 VCFSIFACVCIISSLATRRRVSLKQMDTCRSV---HELRLESIVARFHLWTHGGAHTPLV 928560
Query: 73 GEYTHHKDP 81
H + P
Sbjct: 928559 FISLHSQHP 928533
>gi|154331997|ref|NC_009297.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 4
Length = 475968
Score = 27.3 bits (59), Expect = 7.5, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -1
Query: 5 RTLPRPLSLCLSLCLCLCLAAALG-SAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQ 63
R L SLCLSL +C C+ + +S + + V Q L + P Q +
Sbjct: 339102 RLLVFSFSLCLSLSVCACMCVGVWVCVESLTAASRATLTRVADQALLARNFNPTQKLRSA 338923
Query: 64 EKGTESAFEGEYTHHK 79
+ AF + T H+
Sbjct: 338922 CRARREAFSLDRTVHR 338875
>gi|154332491|ref|NC_009299.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 7
Length = 586128
Score = 26.9 bits (58), Expect = 8.3, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 10 PLSLCLSLCLCLC 22
PLS+CLS+CLC C
Sbjct: 571775 PLSVCLSVCLCAC 571813
>gi|154334717|ref|NC_009307.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 15
Length = 606948
Score = 26.9 bits (58), Expect = 10.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -1
Query: 9 RPLSLCLSLCLCLCLAAALGSAQSGSCRDKK--NCKVVFS--QQELRKRLTPLQYHVTQE 64
RP+ +CLC CL + G Q G D+ N +V Q E R +P ++H T E
Sbjct: 550116 RPIHARKEMCLCGCLHSCAGKCQ*GRQNDRM*GNARVCAPELQGERGVRTSPHKFHTTDE 549937
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SPP00000089_1.0 # Protein # Selenoprotein R (SelR) #
Drosophila melanogaster # Complete
(197 letters)
Database: genome.fa
35 sequences; 31,379,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75... 77 9e-15
gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75... 30 1.5
gi|154337375|ref|NC_009313.1| Leishmania braziliensis MHOM/BR/75... 28 6.1
gi|154334717|ref|NC_009307.1| Leishmania braziliensis MHOM/BR/75... 27 9.9
>gi|154340790|ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 28
Length = 1173595
Score = 76.6 bits (187), Expect = 9e-15, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Frame = +3
Query: 10 VNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGC 69
V E R+ LT +Y + +E GT+ P G Y+ +E+GVY C C L+ S K+ GC
Sbjct: 1055946 VGDAEWRRVLTSQEYCILREKGTD-PVGGKYDDVFEEGVYVCAGCKTPLYLSSMKFACGC 1056122
Query: 70 GWPAFNDVLDKG-KVTLHRDASIPGMVRTEVRCSRCSAHMGHVFDDG---PPPKHRRFCI 125
GWP F D + K + RD R E+ C+ C+ H+GHVF + PP + R C+
Sbjct: 1056123 GWPGFYDCIPKRVREQPDRDGH-----RVEIVCNACNGHLGHVFRNEGFRNPPPNERHCV 1056287
Query: 126 NSASI 130
N+ SI
Sbjct: 1056288 NNTSI 1056302
>gi|154346825|ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 35
Length = 2686796
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Frame = -2
Query: 86 HRDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTEVR--- 142
H S P + T C C GH+ D P + + C N S + + + E +
Sbjct: 645310 HMSRSCPRVAATR-SCYNC-GETGHMSRDCPSERKPKSCFNCGSTEHLSRECTNEAKAGA 645137
Query: 143 ----CARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNAD 178
C C GH+ D P + + C N S E ++ +
Sbjct: 645136 DTRSCYNCGG-TGHLSRDCPNERKPKSCYNCGSTEHLSRE 645020
Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Frame = -3
Query: 86 HRDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTEVR--- 142
H S P + T C C GH+ D P + + C N S + + + E +
Sbjct: 649035 HMSRSCPRVAATR-SCYNC-GETGHMSRDCPSERKPKSCFNCGSTEHLSRECTNEAKAGA 648862
Query: 143 ----CARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNAD 178
C C GH+ D P + + C N S E ++ +
Sbjct: 648861 DTRSCYNCGG-TGHMSRDCPNERKPKSCYNCGSTEHLSRE 648745
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 46 KGVYQCIVCHQDLFSSETKYDSGCGWPAFN 75
KG + C VCH++ E + +S CG+ +N
Sbjct: 544524 KGFWMCAVCHENNRVDEIEDNSRCGFCGYN 544435
>gi|154337375|ref|NC_009313.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 21
Length = 732538
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 138 RTEVRCARCNAHMGHVFEDGPKPT 161
RT VRC RCN HV P PT
Sbjct: 511728 RTCVRCGRCNHTGNHVSAAYPTPT 511799
>gi|154334717|ref|NC_009307.1| Leishmania braziliensis MHOM/BR/75/M2904
chromosome 15
Length = 606948
Score = 26.9 bits (58), Expect = 9.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 125 INSASIDFVKKRIRTEV-RCARCNAHMGHV 153
++S +I K+R++ + RCARC AH G +
Sbjct: 560317 VDSGTIVPEKRRVQAHLHRCARCRAHPGDI 560406